Volvox carteri f. nagariensis: VOLCADRAFT_72914
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Entry
VOLCADRAFT_72914 CDS
T01330
Symbol
splh2
Name
(RefSeq) DEAH-box nuclear pre-mRNA splicing factor
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
vcn
Volvox carteri f. nagariensis
Pathway
vcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VOLCADRAFT_72914 (splh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vcn03041
]
VOLCADRAFT_72914 (splh2)
03009 Ribosome biogenesis [BR:
vcn03009
]
VOLCADRAFT_72914 (splh2)
Enzymes [BR:
vcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VOLCADRAFT_72914 (splh2)
Spliceosome [BR:
vcn03041
]
Complex A
U2 snRNP components
U2 related factors
VOLCADRAFT_72914 (splh2)
Complex B
VOLCADRAFT_72914 (splh2)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
VOLCADRAFT_72914 (splh2)
Ribosome biogenesis [BR:
vcn03009
]
Eukaryotic type
90S particles
Helicases
VOLCADRAFT_72914 (splh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
AAA_22
DEAD
AAA_19
ResIII
Flavi_DEAD
SRP54
AAA
nSTAND3
ABC_tran
AAA_7
PhoH
AAA_29
TrwB_AAD_bind
AAA_30
FtsK_SpoIIIE
TsaE
AAA_23
Motif
Other DBs
NCBI-GeneID:
9617926
NCBI-ProteinID:
XP_002946727
JGI:
72914
UniProt:
D8TJV1
LinkDB
All DBs
Position
Unknown
AA seq
708 aa
AA seq
DB search
MSGDRKRKLELTEEDSGRKRPGPPGDVPAVNPFTGRPYSQRYYDILAKRHGLPVWQAKDE
FVDMINNHQTTVLVGETGSGKTTQIPQFIAEAGYTANRKMVACTQPRRVAAMSVARRVAE
EMDVVLGEEVGYSIRFEECSGPKTCVKFLTDGMLLREAMTDPLLERYSVIILDEAHERTL
ATDVLFGLLKEILKQRKDLKLVVMSATLEAEKFQGYFLDAPLMKVPGRLHPVEIFYTQEP
ERDYLEAAIRTVVQIHVCEPPGDVLLFLTGEEEIEDACRKVTKELTGMGDKVGPVKVLPL
YSTLPPQQQQRIFEPAPPPAREGGPAGRKIVISTNIAETSLTIDGIVYVIDPGFAKQKVY
NPRIRVESLLVSPISRASAHQRAGRAGRTQPGKCFRLYTEASFKKDLQEQTYPEILRSNL
GSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGAMDDDGNLTPIGSIMSEFPL
DPQLAKMLVASPEFRCSNEILSIAAMLSSPNVFLRPREAAKAADEAKARFTHVDGDHLTM
LNVYHAWKSHNEDPNWCYEHFLNYRSLKSADSVRTQLVRICTRMNLRLLSTPYEDKNYYL
NIRKAVTAGYFMQVAHLARQGQYLTVKDNQVVHLHPSTCLDHKPEWVLYQEFVLTTKNYI
RTCLDIKGEWLVDIAPHYFDLENFPKGDCQRALDRLYAKKEKDKSERF
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcgaccgtaagcgaaaattagagttaacagaggaagactcaggacgcaagagg
cctgggccacctggtgacgttccagccgtcaaccccttcacagggcgcccttacagccag
cggtattatgatatcctggcaaagcggcacggcctgcctgtttggcaggccaaagatgag
tttgtcgatatgattaataatcaccaaacgacggttctcgtgggcgagacgggcagcggc
aagactactcagattccgcagttcattgctgaggctggctataccgcaaaccgcaagatg
gtggcatgcacccagccaagaagggtggccgcgatgtccgttgctcgtcgtgtagctgaa
gaaatggatgttgtcctcggcgaggaggtcgggtactccatccgtttcgaggagtgctcc
gggccgaagacgtgcgtgaagttccttaccgacggtatgctcttgcgagaggctatgacg
gatccgttgctggagcgctactcggtcatcatcctggatgaggcacacgagcgcacgctg
gcgacggacgtgttgttcggcctgcttaaagagattcttaagcagcgaaaggacctgaag
ctagtggttatgagtgctaccctcgaagctgagaagttccaaggctacttcctggacgca
cccctcatgaaggtgccaggtcgcctacatcccgtggagattttctacacgcaggagcct
gagcgcgattacctggaggccgccatccgcacggtggttcagattcacgtgtgtgagcct
ccgggcgatgtgctgctcttcctgacgggtgaagaggagatcgaggacgcgtgcaggaag
gttaccaaggagctgaccggaatgggcgataaggtcggacccgtgaaggtgctgccgctg
tactcgacgctgcccccgcagcagcaacaacgtatcttcgagccggcaccgccacccgcg
cgcgagggaggtccggctgggcgcaagatagtcatctcaaccaacatcgccgagacgtct
ctaaccattgacggtattgtttatgtgattgatccgggtttcgccaagcaaaaggtctac
aacccccgcattcgcgtcgagtcgctgctcgtgtcgcctatctcgcgggcttcggcccac
cagcgagcaggtcgtgccggccgaacgcaaccgggcaagtgcttccggctctacacggag
gcctccttcaagaaggacctacaggagcagacgtacccggagattctgcgttccaaccta
ggcagcgttgtattgcaactcaagaagctgggcatcgacgatctggtgcacttcgacttc
atggacccgcccgcacccgagactctcatgcgcgcactggagctcctcaactacctgggc
gccatggacgacgacggcaacctgacgcccatcggcagcatcatgtcggagtttccgctc
gacccccagctggccaagatgcttgtcgcatcgcccgagttcaggtgttcaaatgaaatt
ttgtcgatcgcggccatgctttcgtcaccaaacgtgttcctgcgaccgcgcgaagcggcc
aaggctgctgatgaggccaaggcgcgtttcacccacgttgacggtgaccacctcaccatg
ctcaatgtttaccacgcctggaagagccacaacgaggacccgaactggtgctatgaacat
tttctcaactaccgctcgttgaagtctgcggacagcgttcgcacccagttggtgcgtatt
tgcacacgcatgaacctgcggttgttgagcactccctacgaggacaagaactactacctc
aacatacggaaggctgttaccgctggctactttatgcaggtggcgcacctggcccgccag
ggccagtatctgacggtgaaggacaaccaggtggtacacctgcatccttccacatgcctt
gaccacaaacccgaatgggttttgtaccaggagttcgtgttgacgaccaagaattacatc
cgtacgtgcctcgacattaagggggagtggctggtggacatcgcccctcactatttcgac
ctggagaacttccctaagggggattgccagcgcgcgttggatcggttgtatgccaagaag
gaaaaagacaagtccgaacgcttttaa
DBGET
integrated database retrieval system
