KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_78152
Entry
VOLCADRAFT_78152  CDS       T01330                                 
Name
(RefSeq) eukaryotic initiation factor
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03013  Nucleocytoplasmic transport
vcn03015  mRNA surveillance pathway
vcn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VOLCADRAFT_78152
  09122 Translation
   03013 Nucleocytoplasmic transport
    VOLCADRAFT_78152
   03015 mRNA surveillance pathway
    VOLCADRAFT_78152
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vcn03019]
    VOLCADRAFT_78152
   03041 Spliceosome [BR:vcn03041]
    VOLCADRAFT_78152
   03009 Ribosome biogenesis [BR:vcn03009]
    VOLCADRAFT_78152
   03012 Translation factors [BR:vcn03012]
    VOLCADRAFT_78152
Enzymes [BR:vcn01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     VOLCADRAFT_78152
Messenger RNA biogenesis [BR:vcn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     VOLCADRAFT_78152
   mRNA cycle factors
    Stress granule specific factors
     VOLCADRAFT_78152
Spliceosome [BR:vcn03041]
 Complex C
  Other components
   EJC/TREX
    VOLCADRAFT_78152
Ribosome biogenesis [BR:vcn03009]
 Eukaryotic type
  90S particles
   Helicases
    VOLCADRAFT_78152
Translation factors [BR:vcn03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    VOLCADRAFT_78152
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 Helicase_RecD Cas3-like_C_2 AAA_22 AAA_30
Other DBs
NCBI-GeneID: 9621163
NCBI-ProteinID: XP_002958883
JGI: 78152
UniProt: D8UJP3
LinkDB
Position
Unknown
AA seq 400 aa
MARNRAQDMEEDDEVKFETSKGVKVYNTFDSMGLKEELLRGLYAYGFEKPSAIQQRAVLP
IVQGRDVIAQAQSGTGKSSMISVSTCQLVDVTLRECQVLILSPTRELAQQTEKVILAVGD
FMNIQAHACIGGKSLGEDIRKLDSGVHVVSGTPGRVFDMIQRRNLRTRHIKTLILDEADE
MLAKNFKDQIYDIYRYLPPETQVVLVSATLPAEVLEMTNKFMTDPIRVLVKRDELTLEGI
KQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRQNNFTVASMHGDM
VQKEREAIMGEFRSGAARVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRF
GRKGVAINFVRNDDIRILRDIEQYYSTQIDEMPMNVAELI
NT seq 1203 nt   +upstreamnt  +downstreamnt
atggcccggaaccgggctcaggatatggaggaggatgacgaagtgaagttcgagacgtca
aagggcgtcaaggtgtacaatacttttgattccatggggctcaaggaggagcttcttagg
ggactatatgcttatggctttgagaagccgtcggctattcagcaacgagcagtcctgcca
attgtgcaagggcgtgacgttatcgcccaggcacaatcaggcacgggcaaatcgtccatg
atttctgtttctacgtgccaacttgttgatgtcacgctgcgggagtgccaagtccttata
ctatctccaacgcgtgagctggcacaacaaacggagaaagttatccttgctgtgggcgat
ttcatgaacatccaggcccacgcctgcatcggaggaaaaagcctcggggaggacatccgg
aagttggatagcggcgtgcacgtcgtgtctgggacgcccggtcgcgtgtttgacatgatt
cagcgccggaacttgcggacacggcacattaagacgctcatccttgatgaggcggacgag
atgctggcgaagaacttcaaggaccagatttacgacatctaccggtacctgccacccgag
actcaggtggtgctggtgagcgctacgctgcccgcggaggtgcttgagatgacgaataag
tttatgacggaccccatccgtgtgctggtcaagcgtgatgagctcacactggagggcatt
aagcagttctttgttgctgtggagcgagaggagtggaagtttgacacgctctgcgacctg
tacgacacgctgacgattacacaggcagtcatcttctgcaacaccaagcgcaaggtggat
tggcttacggagaagatgcggcagaacaatttcacggtggcgtccatgcacggcgacatg
gtgcagaaggagcgcgaggccattatgggcgagttccgttcgggcgcggcccgtgtgctc
atcaccacggacgtgtgggcgcgcggcctggatgtccaacaggtgtcactggtcatcaac
tacgatctgcccaacaatcgtgagctgtacatccaccgcatcgggcgctcgggccgtttc
gggcgcaaaggtgttgccatcaactttgtgcgcaatgacgacattcgcatcctgcgcgat
attgagcagtactactcgacgcagattgatgagatgcccatgaacgtggctgagctcatt
taa

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