Volvox carteri f. nagariensis: VOLCADRAFT_78972
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Entry
VOLCADRAFT_78972 CDS
T01330
Symbol
cdc48
Name
(RefSeq) hypothetical protein
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
vcn
Volvox carteri f. nagariensis
Pathway
vcn04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
VOLCADRAFT_78972 (cdc48)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcn03019
]
VOLCADRAFT_78972 (cdc48)
03009 Ribosome biogenesis [BR:
vcn03009
]
VOLCADRAFT_78972 (cdc48)
04131 Membrane trafficking [BR:
vcn04131
]
VOLCADRAFT_78972 (cdc48)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vcn04147
]
VOLCADRAFT_78972 (cdc48)
Messenger RNA biogenesis [BR:
vcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
VOLCADRAFT_78972 (cdc48)
Ribosome biogenesis [BR:
vcn03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
VOLCADRAFT_78972 (cdc48)
Membrane trafficking [BR:
vcn04131
]
SNARE
SNARE associated proteins
Others
VOLCADRAFT_78972 (cdc48)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
VOLCADRAFT_78972 (cdc48)
Exosome [BR:
vcn04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
VOLCADRAFT_78972 (cdc48)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_33
AAA_16
AAA_5
AAA_2
AAA_22
AAA_14
TIP49
NPHP3_N
nSTAND3
AAA_28
RNA_helicase
AAA_17
ATPase_2
Mg_chelatase
Parvo_NS1
AAA_18
ABC_tran
Vps4_C
IstB_IS21
Viral_helicase1
AAA_lid_PRS2_C
NACHT
AAA_7
Sigma54_activat
NB-ARC
TsaE
ResIII
AAA_24
Zeta_toxin
SLFN-g3_helicase
DUF815
Sigma54_activ_2
Zot
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
9621887
NCBI-ProteinID:
XP_002946301
JGI:
78972
UniProt:
D8TIS4
LinkDB
All DBs
Position
Unknown
AA seq
815 aa
AA seq
DB search
MNPSCRKKEKKDFSTAILERKKSPNRLIVEEAVNDDNSVVALHPKTMEKLQLFRGDTVLL
KGKKRKDTVCIVLSDDTVDENKIRMNKVVRKNLRVRLADIVSIHQCTDVKYGKRIHVLPI
DDTIEGITGNLFDAYLKPYFLEAYRPVRKGDTFLARGGMRSVEFKVVETDPAEYCIVAPD
TEIFCEGEPIKREDEEKLDEVGYDDIGGVRKQLAQIRELVELPLRHPQLFKTIGVKPPKG
ILLYGPPGSGKTLIARAVANETGAFFVVVNGPEIMSKLAGESESNLRKVFQEAEKNAPSI
IFIDEVDSIAPKRDKTQGEVERRIVSQLLTLMDGLKSRAHVIVIAATNRPNSIDAALRRF
GRFDREIDIGVPDETGRLEVLRIHTKNMKLDEDVNLEAIARDTHGYVGADLAALCTEAAL
QCIREKMDVIDLEDEQIDAEVLNSMAVTQDHFKTALGMSNPSALRETVVEVPNVSWDAIG
GLENVKRELQELIQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIAVQRGSSAGDAGGAADRV
LNQLLTEMDGMNSKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEKSRLQIFKAC
LRKSPIAPDVDFDTLVKFTHGFSGADITEICQRACKSAIREDIEKNIERERRRAENPDAM
MEDEPDPVPCITKAHFEEAMKYARRSVSDADIRKYQAFAQTLQQSPDRTSVSQMVLAGGL
ARHRLLLPLRLQPLPKALLQQTTTTCTISSKFSVP
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgaacccgtcctgtaggaagaaggagaagaaggacttcagcacggcaatcttggagcgt
aagaagagcccaaaccggctaattgttgaagaggctgttaacgacgacaactcggtggtg
gcgctgcacccgaaaacaatggaaaagctgcagctcttccgtggcgacacggtccttttg
aaggggaagaaaaggaaggacaccgtgtgcattgttctctccgatgacacggtggacgag
aataagattcgcatgaacaaggtggtgcgcaagaaccttcgcgttcgccttgcagatatc
gtctccatacaccagtgcacggacgtcaagtatggaaagcgcattcacgtattgccgatc
gatgacactatcgagggtattaccggcaacctcttcgacgcctacctgaagccctacttt
ctggaggcgtaccggcctgtgcgcaagggcgataccttcttagctcgtggaggtatgcgc
agcgttgagttcaaagtggtggagacagatcctgctgagtattgcatcgtcgcaccggac
acggaaatcttttgtgagggcgagcccattaagcgcgaggacgaggaaaagcttgacgag
gttggctacgacgacattggcggtgtccgaaagcagcttgcgcagattcgcgaactcgtg
gagttgcctctgcgccatccgcagctcttcaagacgattggtgtcaagccgcccaagggt
attttgctgtacgggccccctggcagtggcaagacgctgattgctcgtgcagttgcaaac
gagacgggtgcattcttcgttgtggttaatggaccggagattatgtccaagctggctggc
gagtctgagagcaacttgcgcaaggtgttccaagaggccgagaagaacgcgccttccatc
atcttcattgatgaggtggactcgattgcgcccaagcgtgacaagacgcagggcgaggtg
gagcgccgtatcgtctcgcagctgctgacgctcatggacggcctgaagagccgcgcgcac
gtgattgtcatcgcagccactaacaggcccaactccatcgacgctgccctgcgccgcttc
ggtcgttttgaccgcgagatcgacatcggtgtgcccgacgagactggccgtctggaggtc
ctgcgcatccacacaaagaacatgaagctggacgaagacgtgaatctggaagccattgcg
cgcgacactcacggctacgtgggtgctgatcttgcggcgctgtgtacggaagcggcgctg
cagtgtatccgcgagaagatggacgtgattgacctggaggacgagcagatcgacgccgag
gtgctcaactccatggcggttacgcaggaccacttcaagacagcgctaggcatgagcaat
ccgtcggctctgcgcgagacggttgtggaggtacccaacgtatcatgggatgctattggt
ggcctggagaacgttaagcgggaacttcaggagctgattcaatatccagtggagcaccca
gagaagtttgaaaagtttggcatgtcgccttccaagggtgtgctcttctatgggcctcca
ggttgcggcaagaccctcctcgctaaggcgattgcaaacgagtgccaggccaacttcatc
tcggtcaagggccctgagctgcttactatgtggttcggcgagtcggaagccaacgtgcgt
gaaattttcgacaaagcccgcggctctgccccctgcgtgctgttcttcgatgagctcgac
tcgatcgcggtgcagcgtgggtccagcgcgggtgatgctggcggagctgcggaccgcgtg
ctgaaccaactgctgacggagatggatggcatgaattccaagaagacggtgttcattatc
ggcgccacaaacaggcccgacattattgaccccgcgctgctccggcctggtcgtctggac
cagctcatctacattccgctgccagacgagaagtctcggttgcagatcttcaaggcttgc
ctgcggaagtcgcccatcgcccctgacgtggacttcgacacgcttgtaaagttcacgcac
ggcttctccggcgccgatattacggagatttgccagcgtgcctgcaagtcggccatccgt
gaggacattgagaagaacatcgagcgtgagaggcgacgagcagagaacccggatgctatg
atggaggacgagccggacccagtgccatgcatcacgaaagcgcactttgaggaggctatg
aagtatgcgcgtcgatccgtttccgatgctgacattcgcaagtaccaggctttcgctcag
acgctccaacagagcccggatcggacttccgtttcccagatggtcctggcgggggggcta
gcgcggcaccggctgctgctgccactgcggctccagcctttacccaaagcgctgctgcag
cagacgacgacgacctgtacaattagttctaagttttcggtaccctag
DBGET
integrated database retrieval system
