KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_79141
Entry
VOLCADRAFT_79141  CDS       T01330                                 
Name
(RefSeq) hypothetical protein
  KO
K12883  nuclear cap-binding protein subunit 2
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03013  Nucleocytoplasmic transport
vcn03015  mRNA surveillance pathway
vcn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VOLCADRAFT_79141
  09122 Translation
   03013 Nucleocytoplasmic transport
    VOLCADRAFT_79141
   03015 mRNA surveillance pathway
    VOLCADRAFT_79141
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vcn03019]
    VOLCADRAFT_79141
   03041 Spliceosome [BR:vcn03041]
    VOLCADRAFT_79141
Messenger RNA biogenesis [BR:vcn03019]
 Eukaryotic type
  mRNA processing factors
   5' end processing
    Cap binding complex
     VOLCADRAFT_79141
Spliceosome [BR:vcn03041]
 Common components
  Common spliceosomal components
   Cap binding complex
    VOLCADRAFT_79141
SSDB
Motif
Pfam: RRM_1
Other DBs
NCBI-GeneID: 9624546
NCBI-ProteinID: XP_002946588
JGI: 79141
UniProt: D8TJC0
LinkDB
Position
Unknown
AA seq 284 aa
MQVLNPAITQYRDRRFEGSETDWENALATSTTIYVGNLAFTTREEQLYDVFGRVGHIKRI
VMGLDKIQRTPCGFAFAIYYTRKDAEEAVAFLNGTLVDDRAIRVDLDWGFVEGRQYGRGR
SGGQVRDEFRQDYDPGRGGYGKLMQAEMMEQMGIGMDAGGGSRQDFKRQRTQGGHPGRAG
GGGAGGGGGGRDGAGGGPGGALQAAGGQEGEEVAGGGAGEGREGQQEQEQGGGEAGGDAA
GGAVEGHEAKGDGQDGQDIIPEDEDVIPVPADEHIFEGDDGLGA
NT seq 855 nt   +upstreamnt  +downstreamnt
atgcaggtcttgaatccggcaatcacacaatatagagataggcgcttcgaaggcagcgag
accgactgggagaatgcgctagcaacgagcacaacgatatatgtcggcaacctcgccttc
accactcgcgaggagcagctgtacgatgtgttcgggcgggtgggccacatcaagcgcatc
gtcatgggcctggacaagatccagaggaccccttgcggattcgccttcgccatctactac
accagaaaggacgcggaggaagcggtcgccttcctgaacggcaccctggtggacgaccga
gcgatccgtgtggatttggactggggcttcgttgaggggcggcagtacggtcgggggcgc
tcgggcggccaggtgcgtgacgagttccgtcaggattacgacccgggccggggcggctac
ggcaaacttatgcaggcggagatgatggagcagatgggtataggcatggacgcgggtggc
ggcagtcggcaggacttcaagcggcagaggacgcaaggcggccacccagggcgagctggc
ggtgggggtgccgggggcggcggtggcggcagggatggggccggcgggggccccggtggt
gctttgcaggcggcgggcgggcaggaaggcgaggaggtcgcaggcggaggtgctggagag
gggcgtgaggggcagcaggagcaggagcagggcggcggggaggctggtggggatgcggca
ggtggtgcggtggaggggcacgaggctaagggcgatggtcaggacggccaagacatcatc
ccggaggacgaggatgtaattccggtgcctgcggatgagcacatattcgagggtgatgat
gggttaggggcatag

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