Volvox carteri f. nagariensis: VOLCADRAFT_80160
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Entry
VOLCADRAFT_80160 CDS
T01330
Name
(RefSeq) hypothetical protein
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
vcn
Volvox carteri f. nagariensis
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vcn03041
]
VOLCADRAFT_80160
03009 Ribosome biogenesis [BR:
vcn03009
]
VOLCADRAFT_80160
Enzymes [BR:
vcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VOLCADRAFT_80160
Spliceosome [BR:
vcn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
VOLCADRAFT_80160
Ribosome biogenesis [BR:
vcn03009
]
Eukaryotic type
Pre-60S particles
Helicases
VOLCADRAFT_80160
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DsrH
Motif
Other DBs
NCBI-GeneID:
9624380
NCBI-ProteinID:
XP_002948238
JGI:
80160
UniProt:
D8TPM7
LinkDB
All DBs
Position
Unknown
AA seq
836 aa
AA seq
DB search
MRIRPLSPRTAEPAFFSFLVPPTCSPLACGRIGELDEEEEEEDDDEEEEDEEAEQERAVP
AGKGRGAKSDSATGRKGAGGGAPSAVPKREKTGQAAVASGSDTEDNDDDSLDEDDDGVEE
EEEEEEEEEEEEPTTSGRGAAVPQPKQLQGRQQNGGKAGSFYSDTPEGTKFSSSSFADLN
LSRPLLKAVEALGYKTPTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPFLERLLHRP
RGLAATYVLVLTPTRELAVQIHSMIEKLAQFTDVTVALIVGGLSLSVQAATLRKLPEVVV
ATPGRLIDHLRNSQSVGLEDLAVLVLDEADRLLEMGFRDEVMEVVRCAPKKRQTMLFSAT
FSDQVRDLVSLSLKQPVRLAADAARAAPKLLTQEIVRLKGPAAAATKEAVCVALCSRSFS
SGRTIVFCSTKQRAHRLKILFGLAKLPPAAELHGNMSQTARLESLESFRRGDTAYLLATD
VAARGLDIQGVEVVVNYDAPRKLETYLHRIGRTARAGAAGVAVTLVEDGDRPLLKELTRR
VGGAGGGGGGGVTLRQRLVPPQAVAQWQGRIERMESDVAAILAEERQEADLRKAEMEANK
ASNMLEHEEEIMARPKRTWFVSDRQKKELKKRTAAAAASGGHDMEEDGDDDGGDDGAAAG
KKKAKAVSKAEKRTARKAEAAKEAKEKEAGKRKSAKDAELEANKPKVRSIKTLARELQQQ
HGLTSTKAAKMAAQQITGLKSGSKKSKNKNKKQKTGDGDGGNGGDGGLFSGDGLNTARPG
KLSVSTASPGGDGGMKSIGRFGGKLKSQLSRTELNKLRRGGKGKSSFKSKSRFKRR
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgcgaatacgccccctctctccgcgtacggctgaaccagcgtttttttccttcctagtt
cccccgacttgctcccccctcgcgtgcggccgtataggtgagctggacgaggaggaggag
gaggaggacgatgacgaggaggaagaagacgaagaagctgagcaggagcgcgcggtcccg
gccggtaaaggcagaggagcgaaatcagattctgcaacggggcggaaaggcgcaggggga
ggggctccctcggcggtaccgaagcgtgagaagaccgggcaggctgcggttgcgagcggg
agtgataccgaagacaacgacgacgatagcctcgatgaggatgacgacggcgttgaggag
gaggaggaggaagaggaggaggaggaggaggaggagccaactaccagcggtcgtggcgct
gcggtcccccagccgaagcagctgcagggccggcagcagaacggtggcaaggcggggtcg
ttctacagcgacacccccgagggtaccaagttcagctcctcctccttcgccgacctcaac
ctatccagaccgctgctcaaggcggtggaggcgctgggctacaaaacacccacaccgatc
caggccgcctgcattcccctcgccctggcgggtcgggacatctgcggcagcgccgtcacg
ggtagcggcaagaccgccgccttcgccctgcccttcctggagcgactgctacacaggccg
cggggtctggccgccacctatgtgctggtgctcacacccactcgggagctggcagtgcag
atccactccatgattgagaagctggcccagttcacggatgtcacggtagcgctcattgtg
ggcggactcagtctgtccgtgcaggcggccactctcaggaagctgcccgaggtagtggtt
gctactccgggccggcttatcgaccacctccgtaacagtcagagtgtggggttggaggac
ctggcggttctggtactggacgaagcggacaggctgttggagatgggtttccgcgacgag
gtgatggaggtggttcggtgcgcccccaagaagcggcagaccatgctgttctcagccacg
ttctcagaccaggtacgggacctggtgtcgttgtccctcaagcaacccgtgagactggcg
gcggatgcggccagagcggcacccaagctgctcacacaggagatcgtgcggctcaagggc
cccgctgccgccgccaccaaggaggccgtgtgtgtggcgctgtgcagccggtccttctcc
tcggggcgcaccattgtgttctgctccaccaagcagagggcgcaccgcctcaaaatactg
ttcggactggccaagctgccgcccgcggccgagctgcatggcaatatgagtcagactgcc
cggctggagtccctggagtcattccggcgcggggacaccgcctacctgctcgctaccgat
gttgcggcccgaggtctggacatacagggggtggaggtggtggtcaattacgacgcaccg
cgcaagctggagacctacttgcacagaataggccgcacagcgcgagctggggccgcggga
gtggcggtcaccctggtagaggacggagacagaccgctgctcaaggaactgacccgccgg
gtcggtggcgctggtggtggtggtggtggtggcgttacgttgcggcagcggcttgttccc
ccgcaggcggttgcccagtggcaggggcgaattgaaaggatggagtctgatgttgcggcc
atcctggcggaggagcggcaggaggcggatttgcggaaggcggagatggaggccaacaag
gcttccaacatgttggagcatgaggaggaaattatggcccgacccaagcgcacttggttc
gtgagcgaccggcagaagaaggaactgaagaagcgaaccgcggcggcggcggcctccggg
ggacatgacatggaggaggacggcgacgatgacggcggtgacgacggcgcggcagcgggc
aagaagaaggccaaggcggtcagcaaggcggagaagcgaactgctcgcaaggcggaggcg
gctaaggaggccaaggagaaggaggcgggcaagcgcaagagcgcaaaggacgctgagctg
gaagccaacaagcccaaggtgcgctccatcaagaccctagctcgggagctgcagcagcaa
cacggcctcacttcaacgaaggcggccaagatggcggctcagcaaatcactggtctgaaa
tcagggagcaagaagtcgaagaacaagaacaagaaacaaaagaccggtgatggcgatggc
ggaaatggaggcgatggtgggcttttctccggcgatggcctcaacaccgcgcggcccggc
aagctgtccgtgagcacggcaagtccaggtggcgacggcggaatgaagtccattggtcgc
tttggcggtaagctcaagtcgcagctgagtcgcacggagctgaacaagctgcgccgtggc
ggcaagggcaagagctccttcaagagcaaatcgcgattcaagcggcgctga
DBGET
integrated database retrieval system
