KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_80779
Entry
VOLCADRAFT_80779  CDS       T01330                                 
Symbol
ift140
Name
(RefSeq) intraflagellar transport particle protein IFT140
  KO
K19672  intraflagellar transport protein 140
Organism
vcn  Volvox carteri f. nagariensis
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:vcn03037]
    VOLCADRAFT_80779 (ift140)
Cilium and associated proteins [BR:vcn03037]
 Primary cilia and associated proteins
  Intraflagellar transport (IFT) complex A
   VOLCADRAFT_80779 (ift140)
SSDB
Motif
Pfam: TPR_IF140-IFT172 Beta-prop_IFT140_1st TPR_IF140_C Beta-prop_IFT140_2nd TPR_IFT80_172 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR19_1st ANAPC4_WD40 Beta-prop_EML_2 TPR_2 WD40_Prp19 WDR55 TPR_GEMI5 Beta-prop_EML WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_HPS5 TPR_7 Clathrin Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_2nd TPR_COPA_B Beta-prop_IP5PC_F EIF3I Beta-prop_WDR35_TULP_N Beta-prop_ELP1_2nd TPR_1
Other DBs
NCBI-GeneID: 9616434
NCBI-ProteinID: XP_002949655
JGI: 80779
UniProt: D8TTJ4
LinkDB
Position
Unknown
AA seq 1395 aa
MCDPYYTVQGRPLDPNNEANIKNVRGTECAKLAWHPLLPLLAIGWKDGAISFWNAEERKL
EEDSKIHRNTISSMTWTNSGDRLITGDENGRISMWKTDRLLRPIHVVAYDEPGAVIRHIV
VGLPEEVPETNSQVVVAFYVADGTERATVKWCNDQGYSGVVQEMGESIHSLVHYPERDQL
LVIGASCTLNVLARDEQLGSWATTSKMKFATGTGEAASGAGLQVAWAGNHTLASASEKDN
VVRMYNFDTEDNYVLNLEQDSGLVSRVVCLAFDQRYHLLAVGTTDGRVMMYKYNEPSERS
EPVLDLAKCWEMQPAFFVGNRALSMEWGPFPRLMVVACSDAINVCRKTMLSYKYRDGVAI
MQARRRGEWRECCCYCDCVAVDRVVLENMEVEPQRPPGRLQLQDMQLLGLDLSKGLLLVW
DGERAEVYKVTETNDIMAASQFETTSRCMAINNDSVYRSADCKLEVVNMAGTVKQTIMFD
DNHGSPAFMDVARDFLVTVTNFNFVRIFKVAGREAKPHAGPAPLCPPELKGWKVMSTKVN
GSGSMVATLLVGPEPARAVRLVVWCGESNTHHVHDFTPEGRVPVGLMWDTVEPKLLVVQM
SPAFNEASVEDKPASGDSSQGAEVAIIFVDVDKGILVQEYQPIHQGGATACIGSAAPFLL
TNRKCMVQPNPGSGAYQPFTSNVSKVLMTSFAGMQDSDEKTRRALLDFSFSLATGNMDEA
FRSVKAIKNPAVWENMAHMCIRNKRLDVAEHCLSNMEHARGARALREAKTIEEADARVAT
VAVHLGMIDDARKLYISCERYDLLNQLYRACGQWDKALEVAEKNDRIHLKSTLYAYAQYL
ERGGDLTNAQKHYEASGCGLVEVPRMLFEAEKFNELQAYIQANDSRELILWWGKYLESLG
EYGKALDCYRKAGDSLSMVRIFCFQKDWKLAEEEVANSNDLAGAFHLARQYEAAGRIPEA
VRYYTLAKRYSHGVRLAKMNELDSDLMNLALKSTPGVMVDTADYLFQKGQHEKAATLYMK
GGKLSKAVEMCFQAQLFDVLQHIADDMTPDKSDPALYNRCAEFFMQFGHNDKAVKMLIAA
QQYGRALELCVEHDVAITEEMADSMTPDKSVMGADERNSVICRIAKVAKRQGNYQLAAKK
YTQAGDKVKAMKALLKGGDAEKIIFFAGVSRQKDLYLMAANYLQTLNWHSDPELMKHIIS
FYTKAAAWDSLANFYEACAQIEVDEYRDYEKALQAMREAAKYVAKSKSEDRDQRLAAISD
RIAVSERFVEARQLIASNPSEALRVCEELLQTIPPDSQDLEAGIRIGDVYALMVEYWYEA
RQPMEAYKAIEAMRRRGIILSPYLDTRMVEDIYKALGVAPDMAEDRRGPADLGLRGERDT
DNGGFVEEDVADDDD
NT seq 4188 nt   +upstreamnt  +downstreamnt
atgtgtgatccatattacacggttcagggtcgacctttagatccaaacaacgaagcgaac
atcaagaatgtccgcggcacggagtgtgccaagttggcatggcacccgctgctgcctctc
cttgcaattggatggaaggatggcgcgatatccttctggaacgcggaggagcgaaagctg
gaggaagacagcaagatccaccgaaatacaatcagcagcatgacgtggacgaacagcggc
gaccggctcatcaccggtgatgaaaacggcaggatctccatgtggaaaacggatcgcttg
ctgcggcccattcacgtggtggcgtatgacgagccaggagctgtcatacggcacattgtg
gtgggccttccggaggaggtccctgaaaccaacagccaggtagtggttgcgttctatgtg
gcagacggcacggaacgagctactgtcaagtggtgtaacgaccagggctacagtggggtg
gtgcaggaaatgggtgagtctatacactctctggtgcactacccggagcgggaccagctg
ctggtcatcggcgcctcctgcaccctcaacgtactggcacgtgacgagcagctgggctca
tgggccaccacctccaagatgaagttcgccacgggcacgggagaggccgcgtcgggcgct
gggctccaggtggcctgggcgggcaaccacacgctggcatccgccagtgagaaggacaac
gtggtccgcatgtacaacttcgacacggaagacaactacgtgctcaacctggagcaagac
tcgggattggttagccgggtggtgtgtttggcgttcgaccagaggtaccacctactggcg
gtgggcaccacggatggccgcgttatgatgtataagtacaacgaaccctcggagcgttca
gagccagtgctggatttggctaagtgctgggaaatgcagcccgccttcttcgtcggcaac
cgggcgctatctatggagtggggtcccttcccccggctcatggtggtggcctgtagcgac
gccatcaacgtctgccgcaaaaccatgcttagctacaagtaccgggatggggtggcgatc
atgcaggcaagaaggaggggcgaatggagggaatgttgctgctactgcgactgcgtcgct
gtggaccgcgtcgtgttggagaacatggaggtggaaccacagcgtcccccgggccggctg
caattgcaggacatgcagctactgggtctggacctcagcaaggggctgttgctggtgtgg
gacggggagcgcgctgaggtctacaaggtgactgagaccaatgacatcatggcagcctcc
cagttcgagaccaccagccgctgtatggccatcaacaatgactccgtctaccgctccgca
gactgcaagttggaagtggtcaacatggcgggcacggtcaagcagaccatcatgtttgat
gacaaccacggttcacccgccttcatggacgtggcccgcgacttcctggtcactgtcacc
aacttcaactttgtgcgcatcttcaaagtggcaggccgcgaggccaaaccccacgccgga
ccagcgcccttgtgtccaccggagctcaagggctggaaggttatgtccaccaaagtcaac
ggcagtggcagcatggtggcgactctcctggtggggcccgagccggcgcgcgcagtgcgg
ctggtggtgtggtgtggcgagtccaatacgcaccacgtgcatgacttcacacccgagggc
cgcgtgccggtgggccttatgtgggacactgtggagcccaagctactggtggtgcagatg
tcgcctgccttcaacgaggcgagtgtggaggacaagccggccagcggggacagctcccaa
ggggctgaggtggccatcatctttgtggacgtggacaagggcatcctggttcaggaatac
caacccattcaccagggtggtgccaccgcctgcatcgggtccgcggcgcccttcctgctg
accaatcggaagtgcatggtgcagcccaaccccggttcaggcgcctaccagcccttcacg
tctaacgtgtccaaggtgctcatgaccagcttcgcgggcatgcaggactcggatgagaag
acccgccgcgcgctgctggacttctccttcagcctggcaactggcaacatggacgaggcg
ttccggtcagtgaaagccatcaaaaaccccgcagtatgggaaaacatggcgcatatgtgc
atccgcaacaagcgcctggacgtggcggagcattgcctgagcaatatggagcatgcaaga
ggcgcccgggccctgcgcgaagccaagaccattgaggaggcagatgcgcgggtcgccacc
gtggcagtgcacctgggcatgattgatgatgccaggaagctgtacatctcctgtgagagg
tatgacttactcaaccagctatatcgggcatgcggtcaatgggacaaggcgctggaggta
gcggagaagaacgaccgcattcacctgaagtccactctctacgcctatgcgcagtacctg
gagcgcgggggcgacctgaccaacgcccagaagcactacgaggcgagcggctgcgggctg
gtagaggtaccccgcatgctgttcgaggcggagaagttcaacgagctgcaggcgtacatc
caggccaacgacagccgagagctgattctgtggtggggcaagtacctcgagtcgctgggt
gagtacggcaaggcgctggactgttaccgcaaggcgggcgactcgctgtctatggtgcga
atcttctgtttccagaaggattggaagctggcggaggaggaggtggccaacagcaacgac
ctggcgggcgctttccacctggctcgccaatacgaggcagccggccgcatccccgaggcc
gtgcgctactacacgctggccaagcgctacagccacggcgtgcggctggccaagatgaac
gagctggacagcgacctcatgaacctggcactcaagagcacacctggcgtcatggtcgac
accgcagactacctgttccaaaagggtcagcacgagaaggctgcgacgctgtatatgaaa
ggcggcaagctaagcaaggcggtggaaatgtgcttccaggcgcaactgttcgacgtgctg
cagcacatcgcggacgacatgacacccgacaagagcgatcccgcgctgtacaaccggtgt
gcggagttctttatgcagtttggccacaacgacaaggccgtcaagatgctcatcgcggcg
cagcagtacggccgtgcgctggagctgtgcgtggagcatgatgtggccatcaccgaggaa
atggcggactcgatgacgcccgacaagagcgtgatgggcgccgatgagcgcaactcggtc
atctgccgaattgctaaggtcgctaagcggcagggtaactaccagctggcggccaagaag
tacacgcaggcgggtgacaaggtcaaggccatgaaggcgttgctgaaggggggagatgcg
gaaaaaattatcttctttgcgggtgtctctcgtcagaaggacctgtacctgatggccgcc
aactacttgcagaccctcaactggcactcggatccagagctcatgaagcacatcatctcg
ttctacacaaaggccgccgcgtgggacagcctggccaacttctacgaggcgtgtgcgcag
atcgaggtggacgagtaccgggactacgaaaaggcgctgcaggcgatgcgcgaggccgcc
aagtacgtggccaagtccaagagcgaagaccgcgaccaacgacttgcggctataagcgac
cgcatcgccgtgtcggagcgatttgtagaagcgcggcagctcatcgccagcaacccctcg
gaggcgctgcgggtctgcgaggagctgctgcagactatcccgccggacagccaggacctg
gaggctggtattcgcatcggtgacgtgtacgccctcatggttgagtactggtacgaggcc
cggcagcccatggaggcctacaaggccattgaggccatgaggcggcggggcatcatcctg
tcaccttacctggacacacgcatggtggaggacatttacaaggccctgggtgttgcaccc
gatatggcggaggatcgccggggccccgccgacctgggtctccgcggggagcgggatacg
gacaatggcggcttcgtggaggaggatgtggcggacgacgacgactga

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