KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_80795
Entry
VOLCADRAFT_80795  CDS       T01330                                 
Name
(RefSeq) hypothetical protein
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03013  Nucleocytoplasmic transport
vcn03015  mRNA surveillance pathway
vcn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VOLCADRAFT_80795
  09122 Translation
   03013 Nucleocytoplasmic transport
    VOLCADRAFT_80795
   03015 mRNA surveillance pathway
    VOLCADRAFT_80795
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vcn03019]
    VOLCADRAFT_80795
   03041 Spliceosome [BR:vcn03041]
    VOLCADRAFT_80795
Enzymes [BR:vcn01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     VOLCADRAFT_80795
Messenger RNA biogenesis [BR:vcn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     VOLCADRAFT_80795
Spliceosome [BR:vcn03041]
 Complex C
  Other components
   EJC/TREX
    VOLCADRAFT_80795
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    VOLCADRAFT_80795
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 P-loop_SecA ERCC3_RAD25_C
Other DBs
NCBI-GeneID: 9616440
NCBI-ProteinID: XP_002949774
JGI: 80795
UniProt: D8TTL1
LinkDB
Position
Unknown
AA seq 435 aa
MADPANEEELLDYEEDDVAEAEAVGKAGQEKKGYVGIHATGFKELMLKPELLQAIADCGF
EHPSEVQHECIPHAILGNDVLCQAKSGMGKTAVFVLSILQQLDPKPNECHAIILCHTREL
AFQICHEFTRFSARMKGVTIGNFYGGIPVTQNKETLKKSVPNIVVGTPGRIKQLAKEGAL
PLKHVRFFVLDECDKMLEKLDMRADCQEIFKMTPHEKQVMMFSATLNPEMRAVCKKFMTN
PQEVYVDDESKLTLHGLVQHYVMLHEEEKNRKLNDLLDALDFNQVVIFVKSVARAKMLNQ
LLNECNFPSVCIYGGMEQEERIKVYKNFKEGKHRILVATDLVGRGIDIERVNIVINYDMP
ESDDKAKGESKHGNGADTYLHRVGRAGRFGTKGLAITFVSSQEDSAVLNAVQDRFDVDIK
PLPEKIDASTYMNTN
NT seq 1308 nt   +upstreamnt  +downstreamnt
atggccgatcccgcgaacgaggaggagctgctcgactacgaggaggatgacgtagctgag
gctgaggctgttggcaaggccggccaggagaagaagggctatgttggtatccacgcgact
ggtttcaaggagctcatgctgaagccagagctcctgcaggccatcgcagactgtggcttt
gagcatccatccgaagtgcaacacgagtgcattccgcatgcaattcttggcaatgacgtg
ctctgccaggcgaagtctggtatgggaaagacggcagtattcgttttgtccattctccag
caactggaccccaagcccaacgagtgtcacgcaattatcttgtgccacacgcgcgagttg
gcgttccagatttgccacgagttcacacgttttagcgcaagaatgaagggcgtgacaatc
gggaacttctatggaggcattcctgttacacaaaacaaggagacgctcaagaagtcggtc
ccgaatattgttgtcggaacgcccggcaggattaagcagctggccaaggagggggcgctc
cccttgaagcacgtgcgcttcttcgtgctggacgagtgtgacaagatgctggagaagctt
gatatgcgtgcggactgccaggagatctttaagatgacgccacacgagaagcaggtcatg
atgttttccgctacgcttaacccggagatgcgagccgtctgcaagaaattcatgaccaac
ccgcaagaggtgtacgtggatgacgagtccaagctcaccctgcatgggttggtgcagcac
tacgtcatgttgcacgaggaggagaagaaccggaagctcaacgacctgctcgacgctctg
gactttaaccaggtggtcatctttgtgaagagcgttgcccgagccaagatgctcaaccag
cttctcaacgagtgcaacttcccaagcgtctgcatctatggaggcatggagcaggaagag
cgcattaaggtatataaaaacttcaaggagggcaagcaccgcatcctggttgctaccgat
ctagttggccgcggtatcgacatcgagcgcgtcaacattgttatcaattacgacatgcca
gagtcggacgacaaagcgaagggcgagtccaagcacggaaatggcgcagacacctactta
cacagggtgggacgcgctggccgcttcggcacgaagggcctggccatcaccttcgtgtcg
tcgcaggaggactcggcagtacttaacgctgtgcaggaccggttcgatgtggacatcaag
ccgctgccggagaaaattgacgctagcacatacatgaacacgaactaa

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