Volvox carteri f. nagariensis: VOLCADRAFT_81392
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Entry
VOLCADRAFT_81392 CDS
T01330
Symbol
deh1
Name
(RefSeq) DEAD-box RNA helicase, ATP-dependent, cytoplasmic
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
vcn
Volvox carteri f. nagariensis
Pathway
vcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VOLCADRAFT_81392 (deh1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcn03019
]
VOLCADRAFT_81392 (deh1)
03036 Chromosome and associated proteins [BR:
vcn03036
]
VOLCADRAFT_81392 (deh1)
Enzymes [BR:
vcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VOLCADRAFT_81392 (deh1)
Messenger RNA biogenesis [BR:
vcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
VOLCADRAFT_81392 (deh1)
mRNA degradation factors
5'-3' decay
Decapping complex
VOLCADRAFT_81392 (deh1)
Chromosome and associated proteins [BR:
vcn03036
]
Eukaryotic type
Gene silencing
piRNA pathway
VOLCADRAFT_81392 (deh1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
NA-iREase2
DS
Motif
Other DBs
NCBI-GeneID:
9615412
NCBI-ProteinID:
XP_002951166
JGI:
81392
UniProt:
D8TXT3
LinkDB
All DBs
Position
Unknown
AA seq
406 aa
AA seq
DB search
MATSGEDWKTRLNLPPKDARVRTEDVTATKGNEFEDYFLKRELLMGIFEKGFEKPSPIQE
ESIPIALAGRDILARAKNGTGKTAAFCIPVLERVDPTRSVIQALLLVPTRELALQTAQVC
KELAKYLNVEVMVTTGGTSLKDDIMRLYQTTHIVVATPGRVVDLAGKGVARLNECKMLVM
DEADKLLSPEFQPVVEQLIGFLPEDRQIMLYSATFPVTVKAFKEKFLRKPYIINLMEELT
LKGVTQYYAFVEEKQKVHCLNTLFSKLRINQSIIFCNSVNRVELLAKKITELGYSCYYIH
AKMLQSHRNRVFHDFRNGHCRNLVSSDLFTRGIDIQSVNVVINFDFPKNAETYLHRVGRS
GRFGHLGLAVNLITYDDRINLFKIEQELGTEIKPIPAQIEEKLYCI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggctacgtcaggggaggactggaagacccggctgaatctgccacccaaagatgcccgc
gttcgaacagaggacgtgacggcaacaaagggtaacgaatttgaggactactttctgaag
cgggagctgctcatgggcattttcgaaaagggctttgaaaagccttcgcctattcaagaa
gagtctatccctattgcgctggctgggcgtgatattttggcacgcgctaaaaatgggacc
ggcaaaacagcagcgttctgcattcccgtgctggagagggtggaccctactcggtccgtc
attcaagctctgctcctcgtgcctacgcgtgagcttgcacttcaaacagcacaagtgtgc
aaggagcttgcaaagtatctaaatgtcgaggttatggtcaccacgggagggactagcctt
aaggacgatatcatgcgcctctatcagactacgcatatcgtcgtcgccactccgggccga
gtggtggatttggctgggaagggtgtcgctcgtctgaacgagtgcaagatgcttgtgatg
gatgaggcggacaagctgttgtcgcccgagttccagccagttgtcgagcagctgattggt
ttcctgcccgaagacaggcaaatcatgctatactcggcgacgttccctgtcactgtgaag
gcgttcaaggagaaattcctcaggaagccgtacattatcaacctaatggaggagcttacg
ctaaagggtgtgacgcagtactacgcttttgtggaggagaagcagaaggtgcactgcttg
aacaccctattctctaagctgcgcatcaatcagtcgatcatcttctgcaactcagttaac
cgggtggagttgttggcgaagaagatcaccgagctcgggtacagctgctactacatccat
gctaaaatgttgcagagccaccgcaaccgggtgttccacgacttccgcaacggccactgc
cgtaacctggtgtcgtcggatcttttcactcgcggcatcgatattcagtcagtgaacgta
gtaatcaacttcgacttcccgaagaacgcggaaacgtatctgcatcgcgtggggcggtcc
ggtcggtttggtcatctcggcttggcggtcaacctcatcacgtacgatgaccgcattaac
ctgttcaagattgagcaggagctgggaacagagatcaagcccattccagcacaaattgag
gagaaactctattgcatttga
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