Volvox carteri f. nagariensis: VOLCADRAFT_81727
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Entry
VOLCADRAFT_81727 CDS
T01330
Name
(RefSeq) hypothetical protein
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
vcn
Volvox carteri f. nagariensis
Pathway
vcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VOLCADRAFT_81727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vcn03041
]
VOLCADRAFT_81727
03009 Ribosome biogenesis [BR:
vcn03009
]
VOLCADRAFT_81727
Enzymes [BR:
vcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VOLCADRAFT_81727
Spliceosome [BR:
vcn03041
]
Complex A
U1 snRNP components
U1 related factors
VOLCADRAFT_81727
Complex B
VOLCADRAFT_81727
Ribosome biogenesis [BR:
vcn03009
]
Eukaryotic type
Pre-60S particles
Helicases
VOLCADRAFT_81727
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
WW
ResIII
ERCC3_RAD25_C
GRP
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
9628370
NCBI-ProteinID:
XP_002952040
JGI:
81727
UniProt:
D8U0B1
LinkDB
All DBs
Position
Unknown
AA seq
622 aa
AA seq
DB search
MSGVQRVDDPTLPAPWQALFDPASRLKYYWNPTTNVTTYDRPGGGASAAPAAPSSGGDYY
TNRDRREDYGSGANGNGYTSTSYQKTGMNGQPVSTEGFVSPSEYRRQHDISVQGDHVPDP
LQTFESVGFPPDILDEIRRAGFKYPTPIQAQAWPIALSGRDLVAIAKTGSGKTCGFLLPG
MLHIQQTRKDPRSGPTLLVLAPTRELAVQIKTEADKFGRSSGIRNTCVYGGAPKGPQLRD
IQHGVQIVIATPGRLNDFLEAGQVRLQQVSYLVLDEADRMLDMGFEPQIQRIVRTLPRQR
QTLFFSATWPREVKHIAAQFVVNQTVHVFIGGVEEKLVANKSITQHVLVLNSSHEKFGEL
SRIIRSKPAGTRIIIFCTTKRMCDQLSYQMSREFRAAAIHGDKKQSERDYVLQAFKDGRT
PILVATDVAARGLDIPNVAAVVNFDFPTGTEDYIHRIGRTGRAGATGEAFTFMTGEDAKH
ARDLIQVMREAQQTVPPQLEQLAMRGGFGGGGRNRWASGPSHGGGGFGGGGGYGGGFGGG
GGYGGGGGYSGGHSSAPYGTQGTVGAAVGAAPSYGGRDDRDRRRSRSRSRDRSRRRSRSR
SRSRDRADRGRGSPSYGRYSPR
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgagcggtgttcagcgggttgatgaccccacgctgcctgcgccatggcaagctcttttt
gacccggccagtagattaaagtattactggaacccaacgacaaatgtcactacatatgat
cgtccaggaggcggcgcttctgcagcgcctgcggcgccatcatcaggcggcgactattac
accaacagggatcggcgggaggattacggctctggcgcgaatggcaatggttacacgtct
acctcgtaccagaagacgggcatgaatggccagccagtttcaaccgaaggctttgtatcg
ccttctgagtatcgccgccaacacgacatctccgtgcagggcgaccatgtgcctgacccg
ttgcagacattcgagtctgtgggttttcctcccgacattttggatgagattcggcgtgct
gggttcaaatatcctacgccaattcaagcccaagcctggcccatcgctctgtcgggccgc
gacctcgtggccattgcgaagactggctcgggcaagacgtgcggtttcctccttccgggc
atgctccacatccagcaaacccggaaggatccgcgatcggggcccacgctgcttgtgctt
gcaccgacacgcgaactggcagttcaaattaagacggaggctgacaagtttggccgctcc
tctggcatccggaacacctgcgtctatggtggtgctccgaaggggccgcagctgcgcgac
atccagcacggtgtgcagattgttatcgcgacaccgggtcggctgaacgatttcctggag
gcgggccaagtccgtctgcagcaggtgtcgtatcttgtgttggacgaggcagatcgtatg
ctggacatgggctttgagccccagattcagaggattgttcggaccttgccccgccagcgc
cagacgctgtttttctcagctacgtggccgcgcgaggtcaagcacattgctgcgcagttt
gtcgtcaaccagacggttcacgtgttcatcggtggtgtggaggagaagctggtggctaac
aaatccattacgcagcacgtgttggtgctaaacagttctcatgaaaagtttggggaactt
tcgcgcattatcaggtcgaagccggcaggaacccggatcatcattttctgcaccaccaag
cgcatgtgcgaccagttgtcataccagatgtcccgcgagttccgcgcggcggctatccat
ggcgacaagaagcaatccgagcgcgactacgtcctacaggccttcaaggatggccgcacg
ccgatcctggttgccacggatgttgcggcgcgtggactggacattccgaacgtggccgcg
gttgtcaatttcgacttccccacgggcactgaggattacattcatcgtatcggccgcacc
ggccgtgcgggtgctaccggcgaggccttcacgttcatgacgggtgaggacgccaagcac
gcgcgcgaccttatccaggtcatgcgtgaggcccaacagaccgtgccacctcaacttgag
cagctagccatgcggggcgggtttggcggcggcggtcgcaaccggtgggccagcgggccg
agccacggcggcggtggatttggcggcgggggtggctatggtggcggcttcgggggcggg
ggtggttatggcggcggaggcggttacagcgggggtcattcctctgcaccttacggcact
caggggacggtgggagcagcggttggggcagcgccgtcgtacggtggccgggacgatcgt
gaccgacggcggagccggagcaggagccgggaccgcagccggcgtcggtcgcggagccgg
agccggtcgcgggaccgggctgacaggggtcggggcagcccgtcttatggccggtacagc
ccgcgctga
DBGET
integrated database retrieval system
