Volvox carteri f. nagariensis: VOLCADRAFT_82578
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Entry
VOLCADRAFT_82578 CDS
T01330
Name
(RefSeq) hypothetical protein
KO
K13126
polyadenylate-binding protein
Organism
vcn
Volvox carteri f. nagariensis
Pathway
vcn03015
mRNA surveillance pathway
vcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
VOLCADRAFT_82578
09123 Folding, sorting and degradation
03018 RNA degradation
VOLCADRAFT_82578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcn03019
]
VOLCADRAFT_82578
03041 Spliceosome [BR:
vcn03041
]
VOLCADRAFT_82578
Messenger RNA biogenesis [BR:
vcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
VOLCADRAFT_82578
mRNA cycle factors
Stress granule specific factors
VOLCADRAFT_82578
Spliceosome [BR:
vcn03041
]
Complex C
Other components
Complex C specific factors
VOLCADRAFT_82578
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_occluded
RRM_7
RBD_DEAH11
RBD_RDR6
RRM_MARF1
Nbs1_C
Motif
Other DBs
NCBI-GeneID:
9617030
NCBI-ProteinID:
XP_002954016
JGI:
82578
UniProt:
D8U5R4
LinkDB
All DBs
Position
Unknown
AA seq
620 aa
AA seq
DB search
MATTEAAAPAAQTTATPLTNSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRR
SLGYAYVNYNSALDPQAAERAMETLNYHVLNGKPMRIMWSHRDPSARKSGVGNIFIKNLD
KSIDAKALHDTFSAFGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKEIEGK
IVYVGPFQKRADRPQGKDVYTNVFVKNLPAELGDDELSKMATEFGEVTSAVVMKDEKGSS
KGFGFINFKDAECAAKCVEALNDKEIGGKVLYAGRAQKKTEREAMLRQKVEESKQERYLK
YQGMNLYVKNLADEVDDDALRDLFTSCGTITSCKVMKDTSGKSKGFGFVCFTSHDEATRA
VTEMNGKMVKGKPLYVALAQRKDVRRAQLEANVQNRLGMGAMTRPPNPMTGMGPYGPGAM
PFFAAGPGGMPAGPRAPGMMYPGPMMPPRGMPGPGRGPRGPMMPPQAAAFGPMMAPPMGP
ARGRGGRGRGPMMPMAPYPGPGPVEFPVPAPSVAAASVPVPAVAVPAPEPEVPAAQQPLT
AAALAAAAPEQQKMMIGERLYPQVAELQPDLAGKITGMLLEMDNAELLMLLESHEALVAK
VDEAIAVLKIHNAIPEVPKA
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaccgaagccgccgctccggccgcacagacgaccgctactcctctgacaaat
tcgtcgctctacgtgggtgacctggagaaggatgtcactgaggcccagctgttcgaattg
ttctcttcggttggccccgtcgcctccatccgtgtgtgccgtgatgccgtgacgcgccgc
tcgctgggctatgcctacgtcaactataacagcgctctggacccccaggccgcggagcgg
gccatggagacgctgaactatcacgtattaaatggcaagcccatgcgcattatgtggtcg
caccgcgacccctcggcccgcaagtccggtgtgggcaacatctttatcaagaacctggac
aagtcaatcgatgctaaagcgctgcatgacactttctccgcgttcggcaagatcctttct
tgcaaagtggccactgatgcgaacggcgtgtctaagggctatggcttcgtgcatttcgag
gatcaggctgctgctgaccgcgctattcagacggtcaaccagaaggagatcgagggcaag
attgtttacgtgggccccttccagaagcgtgctgaccggcctcagggcaaggatgtctac
accaatgtgttcgtcaagaatctgcccgcggagctcggtgacgatgagctgtctaagatg
gcgacagaatttggggaggtgaccagcgccgtggtcatgaaggacgaaaagggcagcagc
aagggcttcgggttcatcaacttcaaggatgctgagtgcgcagccaagtgcgttgaggct
ctgaacgacaaggagatcggcggcaaggtgctgtatgcgggacgcgcccagaagaagact
gagcgtgaggcgatgctgcgccaaaaggtggaggagagcaagcaggaacggtacctcaag
taccagggcatgaacctgtacgtgaagaatcttgccgatgaggttgatgacgacgccctg
cgcgacctcttcaccagctgcggcaccattacttcgtgcaaggtcatgaaggacaccagc
ggcaagtccaagggcttcgggttcgtgtgcttcactagtcatgatgaggccacccgcgcc
gtcacggagatgaacggcaagatggtcaagggcaagcccctgtatgtcgctctcgctcag
cgcaaggacgtgcgccgcgcacagctggaggccaatgtgcagaaccgccttggcatgggg
gcgatgactcgcccgccgaaccccatgactggcatggggccatacggtcctggtgcgatg
ccgttcttcgctgctggacctggtggcatgcctgctggacctcgcgctcctggcatgatg
tacccgggccccatgatgccgccgcgcggcatgcctggccctggtcgtggcccgcgtggc
cccatgatgccgccgcaggcggctgcctttgggcccatgatggctccaccaatgggtccc
gcccgcggccgcggcggccgtggccgtggtcccatgatgcccatggcaccgtacccgggc
cccggccccgtggagtttccggttcctgcgccatctgtcgctgctgcctctgtgccggtg
cccgctgttgctgtgcccgcgccggagccggaggttcccgctgcccagcagccgctgacc
gcggccgctttggccgctgccgccccagagcagcagaaaatgatgatcggcgagcgcctc
tacccgcaggtggcagagctgcagcctgacctggctggcaagattaccggtatgctgctg
gagatggacaatgccgagcttctgatgcttctagagtcgcatgaggcgctagttgccaag
gtggatgaggctattgctgtgctgaagattcacaacgcaatcccggaggtgccgaaggcg
taa
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integrated database retrieval system
