KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_84238
Entry
VOLCADRAFT_84238  CDS       T01330                                 
Name
(RefSeq) hypothetical protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VOLCADRAFT_84238
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vcn03041]
    VOLCADRAFT_84238
Spliceosome [BR:vcn03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    VOLCADRAFT_84238
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_WDR75_1st PRP4 WD40_MABP1-WDR62_1st WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_TEP1_C ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_DCAF4 Beta-prop_SCAP Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_Nup120_160 Nbas_N Beta-prop_IP5PC_F
Other DBs
NCBI-GeneID: 9623010
NCBI-ProteinID: XP_002957882
JGI: 84238
UniProt: D8UGV8
LinkDB
Position
Unknown
AA seq 474 aa
MADVFALPESGTREREAHAAKLREFELRRKIRQVVVPTDDGKVRQLLRQLGEPVTLFGER
EMERRERLKRIIAQRDGELDLDLPTTEQTLVEEVAVQKLFYTEGPDELRTARLALTRYSL
LRAKARLLGAKRRREDPGALQASASAQSAAADAVRTIVQQSSELGDTRPISHCQFSPDGA
CLAACGWGGALTLWSVPACVRQWTAPTPSEAPRLTGVAWHPAAAPGQLTHGSSPGAAAAE
PSSTTVVSLASAASDGLIRTLEGHTERLGRLAFHPLGQHLATASFDTTWRLWDVETGLNL
LEQEGHSRAVYGVAFHPDGSLVGSAGLDAYGRIWDCRTGRSVLLLEGHVKQLLSIDFSPN
GHHVATGSEDHTAKVWDLRKRGCLYTLPAHTSLLSTVRWERTAGHYLLTAGYDCVAKLWN
GRDFTLLKALAGHEGKVMGADVSPTGDHLVATVSYDRTIKMWAPEKLPPVLPPP
NT seq 1425 nt   +upstreamnt  +downstreamnt
atggcggacgtgtttgcgctgccggagagcggtacccgggagcgggaggcgcatgccgcg
aagctgcgtgagttcgagctgcgtcgtaagatacggcaggtggtggtgcctacggatgat
ggcaaagtacggcagctgttacggcagctgggggagcccgtcacgctgttcggggagagg
gagatggagcgacgtgagcggctgaagcgcattatcgcgcagcgggacggtgagctggat
cttgacctacccaccaccgaacaaaccctggtggaggaggtggcggtgcaaaagttgttc
tacacggagggccctgacgagctccgtacggcccgcctggcactgacccgctactcgctg
ctccgagctaaggcccggcttctgggggcgaagaggaggagggaggacccgggggcgttg
caggcttccgcatccgcgcagtcggccgctgcggatgccgtacgtactatcgtacaacag
agctctgagttgggtgacacaaggcccatcagtcactgtcagttctctccggatggagct
tgtctggcggcttgtggctggggaggcgccctgacgctgtggtccgtacccgcgtgtgta
cggcagtggaccgcccccaccccctcagaggcacctcgcctgactggggtggcttggcac
cccgcggcggcgccaggtcaactgacccatgggtcgtcaccaggggcagcggcggcggaa
ccaagcagtacgacagtcgtcagccttgcgtccgcggcctcggatggcctcattcgtaca
ttggagggtcacacggagcggttgggccgactggccttccacccgctggggcaacacctg
gccaccgccagtttcgacaccacttggcgcttatgggacgtggagacgggattgaatctg
ttagagcaggaggggcactcgcgtgccgtgtatggggtggccttccacccggacggatcg
ctcgtggggagtgcggggctggacgcgtacggtcgtatttgggactgtcgtacaggccgt
agcgtgttgcttctggagggccatgttaagcagctgttgtccatcgacttctcccccaac
ggccaccacgttgctacgggcagtgaggaccacacggccaaggtgtgggacctccgcaag
cgcggttgtctgtataccctccccgcccacacctccctcctctccactgtacggtgggag
agaaccgcgggtcactacctgctcacggcggggtacgactgcgtggccaagctatggaac
ggtcgggacttcaccctactgaaagcactggcgggtcacgagggcaaggtcatgggagct
gacgtgtcacccacgggtgaccacctcgttgcaacggtatcgtacgaccgtacgatcaag
atgtgggcaccggagaagctgccgccggtgctgccaccgccgtga

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