Volvox carteri f. nagariensis: VOLCADRAFT_84238
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Entry
VOLCADRAFT_84238 CDS
T01330
Name
(RefSeq) hypothetical protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
vcn
Volvox carteri f. nagariensis
Pathway
vcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VOLCADRAFT_84238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vcn03041
]
VOLCADRAFT_84238
Spliceosome [BR:
vcn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
VOLCADRAFT_84238
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_WDR75_1st
PRP4
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_Nup120_160
Nbas_N
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
9623010
NCBI-ProteinID:
XP_002957882
JGI:
84238
UniProt:
D8UGV8
LinkDB
All DBs
Position
Unknown
AA seq
474 aa
AA seq
DB search
MADVFALPESGTREREAHAAKLREFELRRKIRQVVVPTDDGKVRQLLRQLGEPVTLFGER
EMERRERLKRIIAQRDGELDLDLPTTEQTLVEEVAVQKLFYTEGPDELRTARLALTRYSL
LRAKARLLGAKRRREDPGALQASASAQSAAADAVRTIVQQSSELGDTRPISHCQFSPDGA
CLAACGWGGALTLWSVPACVRQWTAPTPSEAPRLTGVAWHPAAAPGQLTHGSSPGAAAAE
PSSTTVVSLASAASDGLIRTLEGHTERLGRLAFHPLGQHLATASFDTTWRLWDVETGLNL
LEQEGHSRAVYGVAFHPDGSLVGSAGLDAYGRIWDCRTGRSVLLLEGHVKQLLSIDFSPN
GHHVATGSEDHTAKVWDLRKRGCLYTLPAHTSLLSTVRWERTAGHYLLTAGYDCVAKLWN
GRDFTLLKALAGHEGKVMGADVSPTGDHLVATVSYDRTIKMWAPEKLPPVLPPP
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtgtttgcgctgccggagagcggtacccgggagcgggaggcgcatgccgcg
aagctgcgtgagttcgagctgcgtcgtaagatacggcaggtggtggtgcctacggatgat
ggcaaagtacggcagctgttacggcagctgggggagcccgtcacgctgttcggggagagg
gagatggagcgacgtgagcggctgaagcgcattatcgcgcagcgggacggtgagctggat
cttgacctacccaccaccgaacaaaccctggtggaggaggtggcggtgcaaaagttgttc
tacacggagggccctgacgagctccgtacggcccgcctggcactgacccgctactcgctg
ctccgagctaaggcccggcttctgggggcgaagaggaggagggaggacccgggggcgttg
caggcttccgcatccgcgcagtcggccgctgcggatgccgtacgtactatcgtacaacag
agctctgagttgggtgacacaaggcccatcagtcactgtcagttctctccggatggagct
tgtctggcggcttgtggctggggaggcgccctgacgctgtggtccgtacccgcgtgtgta
cggcagtggaccgcccccaccccctcagaggcacctcgcctgactggggtggcttggcac
cccgcggcggcgccaggtcaactgacccatgggtcgtcaccaggggcagcggcggcggaa
ccaagcagtacgacagtcgtcagccttgcgtccgcggcctcggatggcctcattcgtaca
ttggagggtcacacggagcggttgggccgactggccttccacccgctggggcaacacctg
gccaccgccagtttcgacaccacttggcgcttatgggacgtggagacgggattgaatctg
ttagagcaggaggggcactcgcgtgccgtgtatggggtggccttccacccggacggatcg
ctcgtggggagtgcggggctggacgcgtacggtcgtatttgggactgtcgtacaggccgt
agcgtgttgcttctggagggccatgttaagcagctgttgtccatcgacttctcccccaac
ggccaccacgttgctacgggcagtgaggaccacacggccaaggtgtgggacctccgcaag
cgcggttgtctgtataccctccccgcccacacctccctcctctccactgtacggtgggag
agaaccgcgggtcactacctgctcacggcggggtacgactgcgtggccaagctatggaac
ggtcgggacttcaccctactgaaagcactggcgggtcacgagggcaaggtcatgggagct
gacgtgtcacccacgggtgaccacctcgttgcaacggtatcgtacgaccgtacgatcaag
atgtgggcaccggagaagctgccgccggtgctgccaccgccgtga
DBGET
integrated database retrieval system