Volvox carteri f. nagariensis: VOLCADRAFT_87463
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Entry
VOLCADRAFT_87463 CDS
T01330
Name
(RefSeq) hypothetical protein
KO
K14794
ribosomal RNA-processing protein 12
Organism
vcn
Volvox carteri f. nagariensis
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vcn03009
]
VOLCADRAFT_87463
Ribosome biogenesis [BR:
vcn03009
]
Eukaryotic type
90S particles
Other 90S particles
VOLCADRAFT_87463
Pre-60S particles
Other pre-60S particles
VOLCADRAFT_87463
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HEAT_RRP12_N
RRP12_HEAT
Motif
Other DBs
NCBI-GeneID:
9620093
NCBI-ProteinID:
XP_002947270
JGI:
87463
UniProt:
D8TLE4
LinkDB
All DBs
Position
Unknown
AA seq
1528 aa
AA seq
DB search
MASEYGDDADGGVAAEVTQRYGRSAQPESQQVVAVLQAVTDVIRNEGLPLSPTSYFAAIM
SALEQPSTQGSHQVVLAMLTLLAVVMPRLPNHVLRARFVGCSELVGSLLAAHHGDAATTK
AALGCLAQVLAAADPSAWIAAVPAFNQMLGFVADARPKVRKRAVEGLVETLASLQRSPAL
GAASELVLKGMWASLSFPWKTPFASPIAVCQRVLPGPAAAAHAAVAASNKQRAAAEEAIT
TAVADALHLIGALKGALPLLAPPTAKAVSDLLLKLYGLRQPLLDRHATEALAALAGASGP
GGVASTRLQSAGELSHLISVVTDTESLWVGSGRDPGLLTALGRLLEAGFSKLAEADPAAC
AARLPRAVHALVPQLVAEQDGVRYGTFEALRGLISDCLNPQVVAAAKMPRGVGSGAAGGP
TPLSSLVLAVAAALSARYQDAWGMALPVAGALVERLGELGVPDAAAPILECLGAIVAGAE
DVAAAAAGADEGGADGGGEGRLGGPVDASHSRAAEATLGTAIRALGPEVVLQVLPLQILE
GLTGTAEPRTWLLPLLRRHVRQARLGYWFKELLPLAQSLGGRAAALSAAGGAPAAALALK
CRTLELQIWHCLPAFISWATDLPDVYGTVVNTLAAAFNNRPDLHPPICQALQRACAQVRH
VLVADGRGPDLVGYADPAAHGPSGAAAGRGGGGGDDDDDDGGDGDAGEEPPVAAVHGGAP
PPGYGAAEAEAALTALRAFNKQWLSVLCKAFLNSEPEVRGPYAAAISAMSAVTDAGVVGG
YFRSALQKLSKIILDEAAPVPPADVVTDGGSDPTDRRNTFLELALWLSYGLPDTAVDVLF
KAVKTAVSYDQASVQKRGFKVLAVLAEAREPWLRTNLAEVLKQHLLGTGATSTLSAARRY
RLRLIRPVVVALQQPGVEVPSGILAAAAGGGGGEDQDMAGADDDDDDDDDDDGDGKRKRA
KAASPLAQRRQLAASLIAEIVMCTKEANKKTRSAAYDLLVGLAHVMDEQDPGRITGSDDE
GDDDAMEQDGGRGGKGGLYEFFTMVMAGLVASTPHMVSATVMALARLTYEFAAAMQNLVA
SLLPPVLSLLRGKAREVAKAVLGFVKVCAMRLPVDLLLPHLKPILEGMLVWAEDSKNKFK
LKVRVIVERLARRCGFDAVAEAMPPSDAKLLAHIRKEAAKRQRRKHEGGGSEAGSEAGDD
DRRSRRSGASSGRSSMARTARGSQWGHTAVFSSEEGGSDGGGGRGGGAKSTKSGGGRGGA
ASVATGRGGSGVRLASGSGDPMDLLDVGASRQLVRSAAGARNAGASARAGDDFKRDPASG
KIVIKDDDEDGGDDDPLGLGRRGGKKRRRAGDADGYDSDDSDYDDLKGVADLKYALKKAG
DSRSVRFAEAAKSLAGARSAAARSSGGRSSASAGGRSEGGRSSGAPGGGPRGRQDGKGGK
GAHSGERFKAKNASGDVKGKAKVEPYAYWSLDRRMLNRRRGKQAAASSKLTSVISGAKAG
AAKGAKAKRQAAAAREVKRQRTGPNDME
NT seq
4587 nt
NT seq
+upstream
nt +downstream
nt
atggcatctgaatacggcgatgacgctgacggcggcgtggcagccgaagttacgcaacga
tatggtcgctcagcgcagcccgaatcgcagcaagttgttgcagtgctgcaggcagtcacg
gatgttattcgaaatgagggtttgccgctcagtccaactagctacttcgccgccatcatg
tcggccctagaacagcctagtacacaaggttcgcaccaggtggtattggctatgttaacg
ctgttggcggtggtaatgccacggctgcccaaccatgtgctgcgtgcccgctttgtgggt
tgctcggagctggtgggttcgctgctagccgctcaccacggcgacgcagcaacaacaaag
gcggcgctgggctgcctggcgcaggttttggcagccgcggatccgtccgcttggatagct
gcagtaccggccttcaatcagatgctgggctttgttgccgacgcgcgtcccaaggttcgc
aagcgggcggtggaggggcttgtggagaccctggcgagtctgcagaggagtccggcgctg
ggggcagccagcgagctggtgctcaagggtatgtgggcctccttgtcgttcccttggaaa
acccctttcgcttctcccattgcagtttgccagcgggtgcttccagggccagctgccgcc
gcacacgccgccgtcgccgcgtccaacaagcagcgggccgcggccgaggaggccatcacc
actgcggtggcggatgcgctgcacctgatcggggcactgaagggggcgctgccgctgctg
gcgccgcccactgccaaggctgtctctgacctccttttgaagctgtacggcctccgtcag
cccctgctggaccgccacgccacggaggccctggcggccctggcgggagcctcgggtccc
gggggagtcgcctcgacccgcctgcagtcggccggggagctgtcccacctgatctcggtg
gttactgatacggagtcgctgtgggtgggcagtggccgggacccggggttgctcacggcg
ctgggaaggctgctggaggccgggttttccaagttggccgaggcggatcccgcggcgtgt
gcagcgcgcctgccacgtgccgtacacgcgctggtgccgcagctggtagcggagcaggat
ggcgttcggtacggcacctttgaggctcttcgcggcctgatctcggactgcctcaacccg
caagtggttgcggccgccaagatgcctcgcggggtggggtccggcgctgctggcggccct
acgccgctgtcctccctggtattggcggtcgcagcggcgctatcagctaggtaccaggat
gcatggggcatggcgttgccggtggctggagctctggtggagaggttgggtgagctgggg
gtgcctgacgccgccgcaccgatcctggagtgtctgggggccatagttgcgggcgcagaa
gacgtcgccgctgccgccgccggtgcggacgaggggggtgccgacggtggcggcgagggc
cgtctgggggggcctgtggatgcttcccattcgcgcgcggcggaggcgacgctgggtacg
gcgattcgggcgctgggtccggaggtcgtgctccaggtgctcccgctgcagatcctggag
ggcttgacgggtacggcagagccgcggacctggctattgccgctgctgcggcggcatgta
cgacaagctcggctgggctactggttcaaggagctgctgcccctggcccagtccctgggt
ggccgggcagctgcgctgtccgctgccgggggcgcacccgcagccgcgctggcgctcaag
tgccgaacgttggagctgcagatctggcactgcctgcccgcctttataagttgggccacc
gacctgccggacgtgtacggcaccgtggtcaacactttagctgcggccttcaacaaccgc
cccgacctgcacccacctatttgtcaggcgctgcagagggcttgtgcacaggtacggcac
gtgctcgtggctgacgggcgcggcccggatttggtgggttatgctgatccagcggctcac
gggcctagcggcgccgccgccggccggggtggcggcggcggcgatgatgatgacgatgat
ggcggcgacggtgacgctggagaggaaccccccgtggcggcggtgcacggcggcgcgccg
ccgccggggtacggcgctgcggaggcggaggcagcattgacggcgctacgcgccttcaac
aagcagtggctatcggttttgtgtaaggcctttctgaactcagagcccgaggttcgaggg
ccttatgcggccgccatttcggccatgtcagctgtgacggatgcgggcgtggtgggcgga
tacttccgatctgccctccagaagctatccaagatcattctggacgaagctgccccggtg
ccgcctgctgacgtggtcacggacggcggctccgacccgacggaccgccgcaacaccttt
ttggagctggcgttgtggctcagctacggcttgccggacaccgctgtggatgtgctgttc
aaggccgtcaagacagcagtatcgtacgaccaggcctccgtacagaagcgcggattcaag
gtgttggcagtgttggcagaggcgagggagccctggttgcggaccaacctggcggaggtg
cttaagcagcacttgctaggcaccggagcgacctccacattgtccgcagctcgccgctat
cggttgcgactcattcgaccggtcgttgtggcgttgcagcagccgggagtggaggttccg
tcagggatactggcagcagcggcagggggtggtggtggtgaggatcaggatatggcgggg
gcggacgatgatgacgacgacgatgatgatgatgatggcgatggcaagaggaagagggca
aaggcggcttcgccgctggcgcagcggcggcagttggcggcgtcgttgattgccgagatt
gtcatgtgcactaaggaggccaacaaaaagacgcgctcggccgcgtacgacttgctggtt
ggcctggcgcacgtgatggacgagcaagatcccggccggatcacgggcagcgatgatgag
ggcgatgatgacgccatggagcaggacggtggcaggggaggcaagggagggctgtatgag
ttcttcacgatggtgatggctggtctggtggcctccaccccccacatggtatccgccacg
gtgatggccctggctcgactcacgtacgagtttgcggcggccatgcagaacttggtggcc
tcgttgctgcccccggtgctgtcactgctgcggggcaaggcaagggaggtggccaaggcg
gtgctgggcttcgtcaaggtgtgcgcgatgcgtcttcccgtggatctgctgctgccccat
ctgaagcccatcctggagggcatgttggtgtgggcggaggactcgaagaacaagttcaag
cttaaggtccgtgtcatcgtggagcgactggctcgccgttgtggcttcgatgcggtggct
gaggctatgcccccctcggacgccaagctgttggcgcacatccgcaaagaggccgccaag
agacagcgccggaagcatgaaggaggcggcagcgaggcgggcagcgaggcgggcgacgat
gaccggcgatctcgccgcagcggtgccagcagcggccgcagctctatggcccgcaccgcc
cggggctctcagtggggccacacggccgtattctcctccgaggaaggaggaagtgacggc
ggtggcggcagaggcggaggcgcaaagagtaccaaaagcggagggggacgtggcggcgcg
gcgtcagtggcgacgggtcgcggcggcagcggtgtacggctggccagcggcagcggcgac
ccgatggatttgctggatgtgggggcatcccgccagctggttcgcagtgcggcaggtgcg
cggaatgcaggtgcatccgcccgggctggcgatgacttcaaacgcgacccggcctcgggc
aagatcgtgatcaaggatgatgatgaggatggcggagatgacgacccgctgggactgggg
cgccgcggcgggaagaagcgccgacgcgccggcgacgccgacgggtacgacagtgacgac
tcggactacgatgacctgaagggtgttgcggacctcaagtatgccctgaagaaggccggg
gactcgcgatccgtgcgcttcgcggaggccgccaagtcgctggctggggcccggtccgcg
gcggcacgcagctccggcggtcgctcctccgccagcgctggcggtcggtctgagggcggc
aggtccagcggggcccctggaggggggcctcgcgggcggcaggacggcaagggcggcaag
ggcgcacacagcggcgagaggttcaaggccaagaatgcatcgggagatgttaaaggcaag
gccaaggtggagccatacgcgtactggagcctggaccggcgcatgctcaaccgccgccgg
ggcaagcaggccgccgcgtcgagcaagcttacgtccgtcatttctggtgccaaggcgggt
gctgccaagggcgccaaggctaagcgccaagcggccgctgcacgggaggtgaagcggcag
cgtactggcccgaacgacatggagtaa
DBGET
integrated database retrieval system