Volvox carteri f. nagariensis: VOLCADRAFT_89729
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Entry
VOLCADRAFT_89729 CDS
T01330
Name
(RefSeq) hypothetical protein
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
vcn
Volvox carteri f. nagariensis
Pathway
vcn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VOLCADRAFT_89729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcn03400
]
VOLCADRAFT_89729
DNA repair and recombination proteins [BR:
vcn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
VOLCADRAFT_89729
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BHD_3
BHD_1
Rad4
BHD_2
Motif
Other DBs
NCBI-GeneID:
9618638
NCBI-ProteinID:
XP_002949353
JGI:
89729
UniProt:
D8TSH3
LinkDB
All DBs
Position
Unknown
AA seq
1176 aa
AA seq
DB search
MAYGSSGDYEWEEVEEEDWEVICVDDEEQKTGVPRTGIEFTLEADEPQRRTKRTITKRER
EAAAAVHRSHVLCLLARALLLDWAAAQPEVQATALSLLPPGSALRNQSSEEPQRAINGML
PLVTWFRSTFAVLPPDLVGPRTGQGTGRRWRPEDELDEQLLRTARAAAGTVECLVALFAA
LVRAQGGSARVVRLLDVVPLAPWRARPKTVRTVVATAGVPPPPPSGTGGGGGGGGGSRRA
LDLEAGDELPPPPPPPPPPPVSRPGQGNAAAAAGGASGGAKGRKGRRLEDVLADRGYGGG
RGKKRRVEGEAGEGGAGGGGGGGVSRSKSTQVAVGRGPAEGTAKARGGKRQKEESKGGGG
GSVPAAEGVCCPGQDAATAAGDDGCRSRPSNKGDEEFELQLQMALLATGREAEVRRRKGQ
EGGPAADGNGNGGGAVRSQSRGGAEAGGGGGGGGDGPGGKAVVANGSGSGSGAPAGTAMS
VRPEVVVSCWAEVYCGSADKGRWIPVDVVNGYVDRPELIDTATQRPTPVCYVVAAELGAL
VDVTPRYCHNLLAAKRNRDEAWWTATADIVQRQPGSAGGGNRGCVGGGGGGGGVGDLRAA
REAAELHQRGLSQLQGLPTSIEGFKSHPLYVLKRHIGKYESLRPGTAPLGLHRGEPYYPR
NQLSVLHTVERWRREGRQVAAQVRDSELRSPAKVVKKRLMGGTAAAAVAAGPTGAARRTA
STRAGGKGLNGGNDEGEEDGDEDVLMLEAAGEGSAAAGAADGGGPTINLYGRWQTDPWVP
PVAEGGIVPKNERGNVECPPLVPELPRGTVHITLGPGLGALCRTLGLDFAPGLVGFEVQG
GRMVPRLDGVVVCEEVSELVVAAYLERETARAAAAAAKLRRVAVAAWRRLLGALRVRLQL
ERDYGDGDGAGAFGAGAGATTGAAQIQIQQQQQQQQLLSGAAAAGGWELEEALGPDTRAD
VEAVCEGEGEGYSGAAAAAGPGRIPGRWGHNPVLFMGAGQLAPPALAAEAVSSRGGADGG
DVDFLRGGSGTSSKLSDLTSWLTDKLRPPEPEPVRVGSMEGTNNRSNIVQGVKDAASAAA
NRAADAASKAAEAANRAAERSGLTASPSRPIDVPTNSELLSAVAKPSPAPGKGPVEEAAR
AEARSESSEPALRAEAVAAGRPEPAVEGGKANCSAP
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggcctatggaagttcaggcgattacgaatgggaagaagtcgaggaggaggactgggaa
gtcatttgtgtggatgacgaggagcaaaagacgggagtgccgaggactggcattgaattc
acattggaagcggatgagccccagcgccgcaccaagcgcaccatcaccaagcgggagcgc
gaggcggccgctgccgtacaccgcagtcacgtgctgtgcctcctagcccgggccctcctc
ctggactgggcagcggctcagccggaagtgcaggccacggcactgtcgctgctgcccccc
ggctcggcgctccggaaccagtcctcggaggagccccagcgggccatcaacggcatgttg
cccctggtcacctggttccggagcacatttgcagtactgccaccggacctggtagggccc
cgtacgggacaaggaacagggcgccgctggaggccagaggacgagctggacgagcagttg
ctccgtacagctcgcgccgcggcgggcactgtggagtgtctggtggccctgttcgcggcg
ctggtgcgggcccaggggggcagcgcgagagttgtacgactgctggacgtcgtgccgctg
gcgccgtggagggcgcggccgaagacggtacgaacagtggtcgcaacggcaggtgtgccg
ccgccgccgccatctggcactggcggtggcggtggcggtggcggtgggtcccgtcgtgct
ttggatctggaggcgggggatgagctgccgccgccgccgccgccaccgccaccgccgccg
gtatcacggccgggtcagggcaatgctgctgccgccgccgggggtgcaagtggcggcgct
aagggccggaagggccgtcggctggaggacgtgctggcggataggggttatgggggcggg
aggggcaagaagcggagggtggagggggaagcaggagaaggaggcgcaggtgggggtggt
ggtgggggggtgagcaggagtaaatccacgcaggtggctgtggggagggggccggcggag
gggaccgcgaaggcgagggggggaaagcggcagaaagaggaaagcaagggcggcggcggc
ggcagtgtgcctgcggcggagggagtatgctgtccgggacaagatgcggcgacagcggcg
ggagatgacggctgcagatcccggcccagcaataagggtgacgaggagttcgagctgcag
ctgcaaatggccctgctagccacaggcagagaggcggaggtgaggaggcggaagggacag
gaggggggacctgcggcggacggcaatggcaacggcgggggcgctgtgcgatctcaatcc
cgcggaggagcagaagcaggaggaggaggaggaggaggaggtgatggacccggtggcaag
gcggtggtggcaaatggatctggatctggatctggcgcgccagctggcaccgccatgagt
gtacgaccggaggttgttgtcagttgttgggctgaggtgtactgcggcagtgccgacaaa
ggacgttggatcccggtggatgtggtcaacggctacgtggacagaccggagcttatcgac
accgccactcagcgccccaccccggtatgctacgtggtggcggccgagctgggagccctg
gtggacgtcaccccccgctactgccacaacctgctggcggcgaaacggaaccgggatgaa
gcctggtggaccgctactgccgatatcgtacagcggcagccggggagcgcgggcggtggc
aaccgcggctgtgttggtggcggcggcggcggcggcggtgttggggacctgcgtgcggct
cgcgaggcggcggagctgcaccagcgggggctgagtcagctccagggactgcccacgtcc
attgaggggttcaagagccaccccttgtacgtactgaaacgacatattgggaagtacgag
tccctccgccccggtacggcacccctggggctacaccggggggagccgtactacccgcgt
aaccagctgagtgtactgcacaccgtggagaggtggcggagggagggccggcaggtggca
gcccaggtacgggactccgagttgcgcagcccggccaaggtcgtcaaaaagcgactgatg
gggggaacagcggcggcggcggtggcggcagggccgacgggagctgcacgtcgtacggca
tctacgcgcgccggcggcaagggactcaacggaggcaatgacgagggggaggaggatggg
gatgaggacgtgttgatgttggaggcggccggagagggctcagcggccgccggtgccgca
gacggtggcggcccaaccattaacttgtacggcaggtggcaaaccgacccgtgggtcccg
cctgtcgccgaaggcggcatcgtacccaagaacgaacgtggcaatgtggagtgcccgccc
ctggttccggagctgccacgtggcaccgtacacatcacccttggacccgggctaggcgca
ttatgccgtacattgggattagattttgcgccgggactggtggggtttgaggtccagggg
gggcgcatggtgccaagattggacggcgtggtggtgtgtgaggaggtttcggagctcgtc
gtggcggcgtacttggagcgggaaacggcgagggcggcggcggcggcggcgaagctgcgg
cgtgtggcggtggcggcgtggcggcggttgctcggggctctgagggtgcgattgcagttg
gagcgggattatggtgacggggacggtgccggtgcttttggagcaggtgccggggcgacg
accggagcagctcagatccagatccagcagcagcagcagcagcagcagctgctttccggt
gcggctgctgcgggcgggtgggagctggaggaggccttgggtcctgatacgcgtgcggat
gtggaggctgtgtgtgagggggagggggaggggtatagtggtgccgctgctgctgcgggg
ccgggtcgtatacctggtcggtggggccacaaccccgttctcttcatgggagctggccag
ctggctccccccgccctagcagctgaagcggtgtcgagccgtggtggtgctgatggtggt
gacgtggacttcctccgtggcggttccggcacctcctccaagctgtcggacctgacctcc
tggctcacggataagctgcggcctccggagccggagcccgtacgagtgggcagtatggag
ggcaccaacaaccggagcaacatcgtgcagggagtcaaggatgcggcctctgccgccgcc
aacagggcagctgatgctgccagcaaggcggcggaagccgctaatcgcgcagcggaacgt
agcggcctaacggcctcccccagccgccctatcgacgtccccaccaactccgagctgcta
tccgccgtagctaagcccagcccagccccaggcaagggccctgtggaggaggcggcgcgg
gctgaggcccggtccgagtcttcggagccggcgctgcgggccgaggctgtggcggcgggt
cggcctgagccagcggtggaaggaggcaaggccaactgtagcgccccctag
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