KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_89913
Entry
VOLCADRAFT_89913  CDS       T01330                                 
Symbol
rfc3
Name
(RefSeq) DNA replication factor C complex subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03030  DNA replication
vcn03410  Base excision repair
vcn03420  Nucleotide excision repair
vcn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    VOLCADRAFT_89913 (rfc3)
   03410 Base excision repair
    VOLCADRAFT_89913 (rfc3)
   03420 Nucleotide excision repair
    VOLCADRAFT_89913 (rfc3)
   03430 Mismatch repair
    VOLCADRAFT_89913 (rfc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vcn03032]
    VOLCADRAFT_89913 (rfc3)
   03036 Chromosome and associated proteins [BR:vcn03036]
    VOLCADRAFT_89913 (rfc3)
   03400 DNA repair and recombination proteins [BR:vcn03400]
    VOLCADRAFT_89913 (rfc3)
DNA replication proteins [BR:vcn03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    VOLCADRAFT_89913 (rfc3)
  DNA Replication Termination Factors
   ELG1-RFC complex
    VOLCADRAFT_89913 (rfc3)
Chromosome and associated proteins [BR:vcn03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    VOLCADRAFT_89913 (rfc3)
DNA repair and recombination proteins [BR:vcn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     VOLCADRAFT_89913 (rfc3)
  Check point factors
   HRAD17(Rad24)-RFC complex
    VOLCADRAFT_89913 (rfc3)
SSDB
Motif
Pfam: RFC_C AAA DNA_pol3_delta2 RCF1-5-like_lid Rad17 RuvB_N Rep_fac_C AAA_5 Sigma54_activ_2 Mg_chelatase AAA_16 AAA_22 DUF815 nSTAND3 AAA_23 ABC_tran RsgA_GTPase AAA_11 AAA_29
Other DBs
NCBI-GeneID: 9618719
NCBI-ProteinID: XP_002949448
JGI: 89913
UniProt: D8TSZ8
LinkDB
Position
Unknown
AA seq 355 aa
MLWVDKYRPQTFDKFVIHKQIADNLKKLVAAGDFPHTLFYGPPGAGKKTLVMALLRAIYG
PGVEKIRVETKPWQIELPSRKLEVELTTISSSYHLELNPSDVGNNDRYVVQEIIKDMARN
RPLGVDGNKGFKVLVLNEVDRLSREAQQGLRRTMEKYSSACRIVMVCNNISKVMEPVRSR
CLCVRVAAPTDDQMMEVLAGVAKKENLTLPPVFAARLVDYASRSMRRALLALEVCKVERY
PFGDDQEPNRADWELYIAEVAKNILEEQSPKQLFLVRGKLYELLASCVPPELIIRQLMLE
LLKNVDDEVKVETVQQAAIFEQRLQEGAKAIFHLEAFVAKVMSVVKNYMVSRGLA
NT seq 1068 nt   +upstreamnt  +downstreamnt
atgctttgggtggacaagtatcgaccacaaacgtttgacaaattcgtcatacacaagcag
atcgcggacaatcttaagaaattggtagcagcgggagacttcccacacacacttttctat
ggacctcctggcgcgggcaagaagacgctggttatggcactcctgcgcgccatctacggc
cctggcgtggaaaagatccgagtggagaccaaaccatggcagattgagttgcccagccgc
aagcttgaggtggagcttacgaccatttcctccagctaccatttggagctcaatccctcg
gatgtgggcaacaacgaccgctacgtggtgcaggagattatcaaagacatggcaaggaac
aggccgctgggggtggatgggaacaagggctttaaggtcctggtgctcaatgaggtggac
cggctgagcagggaagcccaacaaggcctccgtcgtaccatggagaagtactcgtctgcc
tgccgcatcgtcatggtctgcaacaacatctcaaaggtgatggagccggtgcggtcccgg
tgcttgtgtgtacgggtggcagcgcccacggacgaccaaatgatggaagtgctggcgggg
gtcgccaaaaaggagaacctcacgctgccgcccgtgttcgcagcgcgactggtggactac
gcgtcgcggagtatgcgtcgcgctttgctggctttggaggtctgcaaggtggaacgctac
ccatttggtgacgaccaggagcccaaccgggcagactgggagctgtacattgcagaggtc
gccaagaacatcctggaagagcagtcgccaaagcaactcttcctggttcgtggcaagctg
tacgagctactggctagctgcgttccgccggagctcattatccggcaactgatgttggag
ctgttgaagaatgtggatgatgaggtcaaggttgagacagtccagcaagcggcgatattc
gagcagcgattacaagaaggcgccaaggccattttccatttagaagcgtttgtggccaaa
gtcatgagcgtcgtcaagaactacatggtgtcacgcgggttggcatga

DBGET integrated database retrieval system