KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_90392
Entry
VOLCADRAFT_90392  CDS       T01330                                 
Name
(RefSeq) hypothetical protein
  KO
K12881  THO complex subunit 4
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03013  Nucleocytoplasmic transport
vcn03015  mRNA surveillance pathway
vcn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VOLCADRAFT_90392
  09122 Translation
   03013 Nucleocytoplasmic transport
    VOLCADRAFT_90392
   03015 mRNA surveillance pathway
    VOLCADRAFT_90392
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vcn03019]
    VOLCADRAFT_90392
   03041 Spliceosome [BR:vcn03041]
    VOLCADRAFT_90392
Messenger RNA biogenesis [BR:vcn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     VOLCADRAFT_90392
    TREX complex
     VOLCADRAFT_90392
Spliceosome [BR:vcn03041]
 Complex C
  Other components
   EJC/TREX
    VOLCADRAFT_90392
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    VOLCADRAFT_90392
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-GeneID: 9619321
NCBI-ProteinID: XP_002949892
JGI: 90392
UniProt: D8TU90
LinkDB
Position
Unknown
AA seq 343 aa
MAETKLTMSLDDLIAQAGKKKERRPQQQRPASGQAPKSGPRKGLRRNRQKNAANGNAAPT
QPRPKQQPQQQQPQQQQQPQQQQQPRQTQAQQGGQRIRKSGAPNLGIRGGQVQKRNVIEV
PVKMIRSPQQALPPPRRQALPMRQQAPEGKWQHDMYADDYQPPRRAPVPTAPSTKLIVTN
LHHQVSEDDLLELFSTCGTVKSKAINYDNSGRSLGSGWVVFETRAEAEAAKKEYHGVKLD
GRPMEITFADGAGAGASLTKLSSGISVQKPGGGGAGGGRAGGGGGVGKAAGGNGGQRLAA
AAIRETAAASRGGAERNGRGNRLRSAVVGRAQLDADLQDYMQE
NT seq 1032 nt   +upstreamnt  +downstreamnt
atggccgaaactaagttgacgatgtccctggatgatctaatagcacaggcagggaaaaag
aaagagaggaggcctcagcaacagcggccggcctccggccaggcaccaaagtctggtccc
cggaaaggactgcggagaaaccggcaaaagaacgccgcgaacggcaacgcggctcctact
cagccacggcccaagcagcaacctcagcagcagcagccacagcaacagcagcaacctcaa
cagcagcagcagccgcgccagacgcaggcccagcaaggcggtcagcgcattcgcaaaagt
ggcgcgccaaacctcggtattcgcggtggacaggtgcagaagcgtaacgttatcgaagtg
ccggtcaagatgatcaggtctccacagcaggctctcccgcctccgcggagacaggcattg
cctatgcggcaacaagctccggagggcaagtggcagcatgacatgtacgctgatgactac
cagcctccgcgacgtgctcccgttcctacagccccgagtaccaagctcatcgttaccaac
cttcatcaccaagtttccgaggacgacttgctggagctgttctcaacgtgcggcaccgtc
aagagcaaagccatcaactacgacaactccgggcgctccctgggctcggggtgggtcgtg
tttgagacccgggcggaggcggaggcggccaagaaggagtaccacggcgtcaagctggat
gggcggcccatggagattaccttcgcggacggagctggtgccggagcctccttgacgaag
ctatcttcgggcatctcggttcagaagcctggcgggggtggagcgggtggcggccgggcc
ggcggtggcggcggtgtgggcaaagccgcgggcggcaacgggggccagcgcctggcggcg
gctgcgatccgggagacggcagcggcttcgcggggcggggccgagcgaaatggccgcggc
aacagactccgtagcgccgtggtaggccgagcgcaactggatgcggacctgcaggactac
atgcaggagtga

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