Volvox carteri f. nagariensis: VOLCADRAFT_90550
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Entry
VOLCADRAFT_90550 CDS
T01330
Name
(RefSeq) hypothetical protein
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
vcn
Volvox carteri f. nagariensis
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vcn03016
]
VOLCADRAFT_90550
Enzymes [BR:
vcn01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
VOLCADRAFT_90550
Transfer RNA biogenesis [BR:
vcn03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
VOLCADRAFT_90550
Prokaryotic type
VOLCADRAFT_90550
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
9619663
NCBI-ProteinID:
XP_002950077
JGI:
90550
UniProt:
D8TUP7
LinkDB
All DBs
Position
Unknown
AA seq
738 aa
AA seq
DB search
MDAPSDSAVAANNLASTRNDDEPCSMPQTADGDQNMAAAETTQAHNAQSGVGEMAAGAAN
QAAAPASAAPAQGKRPKDKVKRSVAIHTGYVGTGYKAAFLEETGSSINRTLGDDVTIEQV
MGLRMLVDESCYVAGGPGADTEGLVLADSINRHLPSQIRVFTVQKTNKKFSARHMCEERV
YQYYLPASMIDLKCDGGEEDAAKLAVFRDALSCFQVSSYVPVGMGEPGGANVQYKPGRGA
HKRGREREEEDGEGEDCTPRRERTEASGAEPPPPPPPLPPGAAAAAAELPDTGTAGGGSG
GGGDAAAGDTEMRDGASGGGDSGSAATAELPLPPPPPALQRGPQQPHEQSGAVAEASDGD
GDGGGGGDADGEPEAKRPKTAATLASAAEAVAVAEVPPAAGAEGEGPAAAAKRPAAGRRE
GGGRGGGGGGGRDDRRRRRGGGGGGDDGSGGDEDDEEEEEGCAGELDEEEEEEAAEAEAA
AAEAAAGEAGCATVDGGDQGPGTKPSRKRQYGPYGRKCVLQWQMEMDPRDRVTQTYYRRI
HHFTAADPRPLVEGGTPCLLLEVRGQSFMLHHIRHMIGGAVAVALGLMPKDVLLGSLEPP
ARVAIPRAPPHTLLLADCTFGRFPQQCGPGDNDLRNVTGVRLSVRAGGQQRREDFRRSVL
LPALQQLVELAEWGEWKASLYDTYPFPQDGPTPPPPPPPPAACTSRPSSHPTPLRPWEGA
QSITMHHVMRRLAHVVSS
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atggacgctccatcagactcggctgtcgcggccaacaatcttgcttcaacccgcaacgat
gatgagccatgcagcatgccgcaaacagccgatggcgatcagaacatggctgccgccgaa
acgacacaagcacacaacgcccagtccggagtaggcgaaatggccgccggagccgccaat
caagcagctgcacctgcatcagcggcacctgcgcaggggaagcgccccaaagacaaagtc
aaacgcagcgtcgcaatccacacgggctacgttggcaccggctacaaagccgctttcctc
gaggagaccggctcgtccatcaatcgcacgcttggggatgacgtcaccatcgagcaggtc
atgggtttgcgcatgcttgtggacgagtcgtgctatgtggcagggggtccaggggccgat
accgagggactggtcctggctgattccatcaaccgacacctgccgtcgcagatccgtgtg
tttaccgtacagaagaccaataagaagtttagtgctcggcacatgtgcgaggagcgcgtg
tatcagtactacctgccggctagcatgatcgacctcaaatgcgatggtggtgaggaggac
gcggcgaagctggccgtgttcagagacgcgctgagttgcttccaggtctctagttatgtg
ccggtcggcatgggggaacccgggggagcaaatgtgcagtacaaaccaggccgcggcgct
cacaagcgcgggcgggagagggaggaggaggacggcgaaggagaggactgcacgccgcgt
agagaacgtacggaagcaagcggcgcagagccgccgccgccgccgccgccgctccctcct
ggcgctgccgccgctgccgctgagcttccagacaccggcaccgctggcggcggcagcggc
ggcggtggggacgcagccgccggtgacacggagatgcgtgacggagccagcggaggcggc
gacagcgggtcagcggcgacggcggagctgccgctaccgccgccgccacctgctctgcaa
aggggtcctcagcagccgcacgagcaatccggagcggtggcggaggcgagtgacggtgac
ggtgacggtggtggtggtggtgatgccgacggagaaccggaagcaaaacgccccaaaacc
gccgccactttagcttcagcggcggaagcggtggcggtggcggaggtgccgccagcggcg
ggagccgaaggtgaaggacctgctgccgctgccaaacggccggcagccggccgccgggag
ggcggaggccggggcggcggaggcggcggcggcagggatgatcggcgacgacgtcgcggc
ggaggcggcggcggtgacgacggcagcggcggggatgaggacgacgaggaggaagaggag
ggctgcgccggggagctggatgaggaggaagaggaggaggcggcagaagcagaagcagca
gcagcagaagcagcagcaggagaagccgggtgcgcaactgttgacggaggtgatcaagga
cctggcaccaaaccatctcgcaagagacagtacggcccgtacggtcgtaaatgtgtactg
caatggcagatggagatggatccccgggaccgcgtcactcagacctattaccgccgcatc
caccacttcacggcggcggacccccgccccctggtcgagggcggtactccctgcttgcta
ctggaggtgcgaggtcagagcttcatgctgcaccacatacggcacatgatcgggggggcg
gtggcggtggcgctgggccttatgcccaaggacgtcttgttgggctccctggagcccccc
gcccgggtcgccatcccccgcgcccccccgcacacactgctgctggcagactgcacattc
ggccgcttcccgcagcagtgcggcccaggagataacgatttgagaaatgtgactggtgta
cggctcagtgtacgagcaggagggcagcagcggcgggaggacttccgacgctccgtactc
cttcccgccctccagcagctggtggagctagccgagtggggggagtggaaggcgtcgctg
tacgacacgtacccattcccgcaggacggccccacaccgccaccgccaccgccaccacca
gccgcctgtacctcacgtccctcctcccaccccaccccactacggccgtgggagggtgct
caatccatcaccatgcatcatgtgatgcgccgcctcgcacacgtggtgtccagctaa
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