Volvox carteri f. nagariensis: VOLCADRAFT_90875
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Entry
VOLCADRAFT_90875 CDS
T01330
Name
(RefSeq) hypothetical protein
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
vcn
Volvox carteri f. nagariensis
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vcn03041
]
VOLCADRAFT_90875
03016 Transfer RNA biogenesis [BR:
vcn03016
]
VOLCADRAFT_90875
Enzymes [BR:
vcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VOLCADRAFT_90875
Spliceosome [BR:
vcn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
VOLCADRAFT_90875
Transfer RNA biogenesis [BR:
vcn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
VOLCADRAFT_90875
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
ResIII
Motif
Other DBs
NCBI-GeneID:
9617513
NCBI-ProteinID:
XP_002950341
JGI:
90875
UniProt:
D8TVA6
LinkDB
All DBs
Position
Unknown
AA seq
776 aa
AA seq
DB search
MSAFEELGVMPELVKAVEELGWMLPSPVQAEAIPLILGGGDVMAAAETGSGKTGAFAIPV
LQIVHEALRQRVRSGAAASSSGRGGGNAGGGVASPAAECVLSTEDRDLHLAVSSDGCTAQ
SRSEKSWGGVRATMGVFASCGGKVYYEVTVNDEGLSRVGWSCSTAALDLGTDRLGFGFGG
TGKKSHQRQFDSYGEPFGKGDVIGCMLDCTGGGSVSYSKNGRHLGEAFKLPPHLQSQIFL
PAICLKNAEATVNFGVTPFAHPPPPGFIAMTKAPAAWIAAAASAAAAATSSTAAAAAADG
SKPDCIILEPAKDLAEQTANCFTDYGKHLHAPAIRTGLFVGGVDAVPQIRMLREGVHIAV
GTPGRVIDFVESGKIPLDQVRFFVLDEADRLIADNPDVVTKIYNRLPKGGTGVNRLQVLL
FSATLHSTEVKDMAAKICVNPILVDLKGKDAVPETVDHVLVRVNPAEDRSWLQSKPEVFT
DGCHAVDCIGPSTATTRECLSEATKRLKQRLLQRLIDTLRMEQCLIFCRTNYDCDQLERF
LNSLGGAGGGGGGEGGFRGKMESGKENPYSCVVLAGARSMDERRAALSAFKDGDVRFLIC
TDVAARGIDIKELPYVINMTLPDKSEDYIHRIGRVGRADTMGLAISLVSEVPEKVWYCSV
KGLKPWLAPDASNTKTTDKGGHTIWYDEKALLGAIETRLGRSIPSMSEDLSLPAELAERL
AAGGDKYGQQRGGGVSQEVTAHLEQIAQNVQHLASLEWHVQTSFLRLKQRWQSAQG
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcgtttgaggagcttggcgtgatgccggagctggtgaaggccgttgaagagctt
ggctggatgcttccctctccagttcaggcggaggccataccgctcatcctcggaggtggc
gacgtcatggcggctgctgagacgggcagcggcaagaccggggccttcgccatccccgta
ctgcaaatcgttcacgaggccctccgacagcgggtgcgcagcggcgctgccgccagctca
agcggccgcggtggcggcaacgccggcggcggcgtcgccagcccggcggcggaatgcgtg
ctgagtacggaggatcgggatctgcatctcgccgtgtcgtcggacggttgtacggcacag
agtcgatctgaaaagagctggggcggcgtccgggccacgatgggcgtgtttgcgtcctgc
ggcggcaaagtctactatgaggtaaccgttaacgacgaggggctgagtcgagttggttgg
agctgctcaaccgccgccctggatctgggcactgaccgactggggtttggtttcggaggc
accggcaagaagtcccaccagcgtcagttcgactcgtacggcgagccctttggcaagggc
gacgtcatcggctgcatgctggactgtacgggaggcggatctgtgtcgtacagtaaaaac
gggcgacatctgggagaggcctttaagctgccaccgcaccttcagagccagatcttcctt
ccagccatctgcctaaagaacgccgaagcaaccgtcaacttcggagtcacacccttcgcc
cacccgcccccaccgggcttcatcgccatgaccaaggcacccgcggcgtggatcgccgcc
gccgccagcgccgccgccgctgccacctcttccaccgccgccgccgccgccgcggatggc
agcaagcccgattgcatcattctagaacccgccaaggatctcgccgaacaaactgccaac
tgctttaccgactacggcaaacacctccatgcgccggctatccgtacgggattgttcgtt
gggggtgtggatgccgtaccgcaaattcggatgcttcgagaaggtgtgcacatcgccgtt
gggactcctggacgagtgattgacttcgtggagagcggcaagataccgttggatcaggtt
cgtttcttcgtgctggatgaggcagacaggctgattgctgacaacccggatgtcgtcacc
aagatctacaaccgcctgcccaaggggggaacgggagtcaatagactgcaggtgctcctc
ttcagcgccaccctccacagcaccgaggtgaaggacatggccgccaagatctgtgtgaac
cccatcttggtggatttgaaggggaaggatgccgtaccggagaccgttgaccacgtcctg
gttcgtgtcaaccccgcggaggaccgcagctggctgcagagcaaacccgaggtgtttacc
gacggctgtcacgccgtggactgcatagggcccagcaccgccaccactcgcgagtgcctc
tccgaagccacaaaacgactgaagcagcggctgctacagcgcctcattgacacactccgc
atggagcagtgcctgatcttctgtcgtacaaattacgactgcgatcagctggagcgcttt
ttgaacagcctggggggagccgggggtggtggcgggggtgagggcgggtttcgtggcaag
atggagagcggcaaggagaatccgtacagctgtgtcgtactggctggggcgagaagtatg
gacgagcgccgtgctgcgttatccgccttcaaggacggtgacgtgcgcttcctcatttgt
acggacgtggcggcccggggtattgacatcaaggagctgccgtacgttatcaacatgacg
ctgccggacaagagcgaggattacattcacaggatcggtcgcgtggggcgtgctgatacg
atgggtctggcgatcagcctggtttcggaggttcccgagaaggtgtggtactgcagcgtc
aagggactcaagccctggctggcgcccgacgcgtccaatacaaaaaccacggacaagggt
ggacacactatttggtacgacgagaaggccctcctaggggccattgaaactcgtctgggt
cgttccatcccctctatgagtgaggacctaagcctgcctgccgagctggcggagcggctg
gcggctgggggtgacaagtatgggcaacagcgtggcggcggtgtgagccaggaggtgact
gcgcacttggagcaaattgcgcagaacgtccagcatctggcgtccttggaatggcacgtg
caaacgagcttcctgcgcttgaagcagcggtggcagtcggcccaaggttga
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integrated database retrieval system
