Volvox carteri f. nagariensis: VOLCADRAFT_92540
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Entry
VOLCADRAFT_92540 CDS
T01330
Name
(RefSeq) hypothetical protein
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
vcn
Volvox carteri f. nagariensis
Pathway
vcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VOLCADRAFT_92540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcn03019
]
VOLCADRAFT_92540
Messenger RNA biogenesis [BR:
vcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
VOLCADRAFT_92540
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
VOLCADRAFT_92540
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Tnp_22_trimer
PMEI
Hemagglutinin
STX6_10_61_N
Motif
Other DBs
NCBI-GeneID:
9615985
NCBI-ProteinID:
XP_002951901
JGI:
92540
UniProt:
D8TZX7
LinkDB
All DBs
Position
Unknown
AA seq
899 aa
AA seq
DB search
MPQYSAHKQAHDQENQNQREKLEGELKKEIKKLQRLREQIKGWIAGADIKDKQPLIDARK
SIERDMERFKACEMEAKAKGSAAGGADRDSTQRAKDEARDWIKTVVDQLTEKVESMEAEM
EELQVTVKKRQKPPVRLTSLEETVGRHKDHIDRLEKVLRCIDNETIQPDELSDLKEEMDL
YLLTTDDTVWGAGVRCGLGRRETGGEGGWVGAEATGDEAPLTTSQTGILCAQNTEDGEDM
GMDLSNVDDMYGMFQDRLDAVDNAAPAAPLHSVKHGKGGREKEAEEAREKERERERAAAA
AAKAQLIAQAGGLFFFRIWYVRVVWWCVRQGNTNLKLHDEDEVRKPLANASSVGAGPGNG
VSVSGGSVGAAAGGKPSTPVAAPPATTTAAAGPGLPLAVPPLAAPQPSVGPSGSRQTAPS
TPAKEPDSGTATPRTATMAPSTASPGLSSSEAASPMPPGGGAVGTPHAAGPVLGPMSLGA
HGQPPPPPPPPPPPGMALAGGGPARTPTSGGPTANGGGGGAGGMDGGGGVPRWLAAAASG
GPAGGSQGSEAPHSIRDLSSTQNGAGPGPRQGPASASSAAAAAATAGGGGGGGGFAATGP
GTAGTPSGTADGGGGGGPLASSAAAAAAGRQPTDRGPAAGPSGPSGMTDALTARMAGVVL
GGSGAANANVNASSAGAGPGSRASSAGGMGLSPQSAAAAAAASSAGSAGGGGGLLLPGDL
PPVVPAYSVSAAKQILEACYARGVIPHLSDTEWKHTRPRHPVAVPASYPKTAPEVVDNPA
LFRKMDPECLFFAFYFQPNTYQQFLAAHELKRQSWRFHRHHNAWFQRFTEPAVTSEEYEQ
GAYVYFDYNIVHDDMQTGWCYRRKENFTFRYDALEDELRVANLTPQQTVAMAMAQVQGL
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgccgcagtactcggctcacaagcaagcgcacgaccaagaaaaccagaatcagcgggag
aagcttgaaggagagcttaagaaggagattaagaagctgcagcggttgcgagagcagata
aagggatggatcgctggagcggatatcaaggacaagcagccgttgatcgatgcacgcaag
tctatagagcgcgatatggagcgtttcaaggcttgcgaaatggaggccaaagcgaagggc
agcgcagcagggggagccgaccgtgattctacgcagcgcgcaaaggacgaggcgcgggac
tggattaagacggtcgtggatcagcttactgagaaggtggagtccatggaagcggaaatg
gaggagctgcaggtgaccgttaagaagcgtcagaaaccccccgtccggttgacctccctg
gaggagacagtgggccgccacaaggaccacatcgaccgattggagaaggtgctgcggtgt
atcgacaatgagaccatccaaccggatgagctgtcggatctgaaggaggagatggacctc
tacctgctcacaacggatgatacggtgtggggagcaggagtccgctgcggcctggggagg
agggaaacgggaggggaagggggttgggtgggtgcggaggccacaggggacgaggcccca
ctcacaacatcccaaactggaattttgtgcgcacagaacaccgaggacggcgaggacatg
gggatggacctatccaacgtggacgacatgtacggcatgttccaggaccgtttggatgca
gtggacaatgcggccccggcggcgcccctacacagcgtcaagcacggcaagggcggcagg
gagaaggaggcggaggaggcgagggagaaggaacgggaacgggagcgggctgcggcggca
gctgctaaggcgcaactcatagcgcaggcaggtggcctcttttttttccgcatatggtat
gtacgcgtggtgtggtggtgtgtacgacaggggaatacgaatttaaagcttcacgacgag
gacgaagtacggaagcccctcgccaacgccagcagcgtcggagcggggcctggcaatggc
gtcagcgtcagcggtggcagcgtcggtgccgccgccggcggcaagccctcgacacctgtg
gcggcgccgccagcgaccacgacggcagcggcggggcctggtcttcctcttgccgtaccg
ccgctggcggcgccgcagccgtcagtggggccgtcgggatcaaggcagacggcgccgtcg
acgccagcaaaggaacccgactctggtacggccacgccgcgaacagccaccatggcgcca
tcaacagcatccccggggttgtcctcttcagaagcagcctcgccgatgccgcctggcggc
ggcgccgtcgggaccccccacgccgctgggcccgtcttgggccctatgtccttgggcgcc
cacgggcagccgccgccgccgccgccgccgcctcccccgcctgggatggccctggcggga
ggggggccggcgaggacgccgacgtcagggggtccgacggcaaacggcggtggcggcggc
gccggtggcatggatggcggcggcggggtgccgcgttggctggcggcggcggcgtccggg
ggccctgcggggggatcccagggctcggaggccccgcactccatccgggacttgtcatct
acgcagaacggagcggggccggggccacggcagggtccagcgtctgcatcatcagcggcg
gcggctgcggcgaccgccggcggtggtggcggcggcggcggctttgccgccaccgggccg
gggaccgcaggaacgccgtcgggtactgctgacggcggcggcggcggcgggccgttggcg
tcgtccgccgccgcggcggcggcgggtcgtcagcccacggaccgagggcccgctgccggt
cccagcgggcccagtggcatgacggacgcactcacggcgcgaatggcaggcgtggtactg
gggggaagtggagccgccaacgccaacgtcaacgcgtcgtcggccggagccggccctggc
tcacgagccagcagtgccggcgggatgggcttgtcgccgcagtccgcggccgctgccgcc
gccgccagcagcgcaggcagcgccggcggcggcggcgggttgttgcttcccggggatctt
cccccggtagttcccgcgtattcggtgtccgctgcgaaacagatcctggaggcttgttac
gcacgcggggtgataccacacctatccgacacggaatggaaacacacacggccacggcac
cccgttgccgtacccgcgtcgtaccccaagacggcgcccgaggtggttgacaacccggcg
ctcttcaggaaaatggaccccgagtgcctgttcttcgccttctacttccagcccaataca
taccagcagtttctggcggcacacgagctcaagcggcagtcctggcgcttccaccgccac
cacaacgcctggttccaaagattcacggagccagccgtgacttcggaggagtacgagcag
ggggcctacgtgtactttgactacaatattgtgcacgatgacatgcagaccggttggtgc
tatcggcgcaaagagaacttcacgtttcggtacgacgctctggaggacgagttgcgtgtt
gccaacctgacgccgcagcagacggttgcgatggcgatggcgcaggtgcaggggctgtga
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