KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_98786
Entry
VOLCADRAFT_98786  CDS       T01330                                 
Name
(RefSeq) hypothetical protein
  KO
K12875  apoptotic chromatin condensation inducer in the nucleus
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03013  Nucleocytoplasmic transport
vcn03015  mRNA surveillance pathway
vcn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VOLCADRAFT_98786
  09122 Translation
   03013 Nucleocytoplasmic transport
    VOLCADRAFT_98786
   03015 mRNA surveillance pathway
    VOLCADRAFT_98786
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vcn03019]
    VOLCADRAFT_98786
   03041 Spliceosome [BR:vcn03041]
    VOLCADRAFT_98786
Messenger RNA biogenesis [BR:vcn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     VOLCADRAFT_98786
Spliceosome [BR:vcn03041]
 Complex C
  Other components
   EJC/TREX
    VOLCADRAFT_98786
SSDB
Motif
Pfam: RRM_ACIN1 RSB_motif SAP RRM_1 HeH
Other DBs
NCBI-GeneID: 9627130
NCBI-ProteinID: XP_002957706
JGI: 98786
UniProt: D8UGA7
LinkDB
Position
Unknown
AA seq 889 aa
MKASDVPSLKVAELREALKERGLSTTGTKAVLAERLLTALAAEEKDGKGASDSPSGKGDS
SSEDAADAPEPKGTTQVEAQTQPTPSKTADKAAPAARATAKPAPSDEPKAPEEDKQGAAS
VNPGADSEPPLAAEAPAASVGAAENSARSPAKSNDPEDEQPRAAGDGEDQPEAAKAKEVV
EDVKVEDAVMTEAQPEAGGGPEAEHEEQVDYGTDEITAPDESVEDGGPLPPRTEKMGLGE
KEGGQSQADNSVDEQQQQQQQHPPKSQGRRTGQADEDTAMADAAAGDAAGAGKEADADGV
TDGQGAPADGGGEAAAPGTAVGAAAPLTTPPASAGKEDVKESAATGGSVRQDAGTQQPSA
AVVTTKPPARPDPTPPPAAGSGRKRQPIEFKMDEVEQRVAAKRAAREATAGEGVGAASPA
EEKITPASGPAVTAAPAGKAQSSAAAAATPPEATTKVQAQAVTEKDVPAAAPPVPEAPEV
PAVAAAAAAATERAAKLQKLDAAGRKAAGLVGAARPAGGAPAGPKGGGGGAAAATVAAKR
LSAPPPLEGPATRALRIDGFVRPFTENQVRQFMSQHGTVEDLWMPTIKNYCYVVFAEVTH
GEAAAAATNGVVWPSGNPTSILKPSYVSPEDAATAIANGRAGLMDPPKGGGAVGGPLKSP
GTAAAAAGGGGSGSTLASPKGGPAPAPLAVVGAAGVRRDTLTAAVAAAAADAAAAKQKTP
AAAVAAGANTAAGRKRSEPEGELPPAAADASTGDAGDNAAAAQPAAVAEVVAAPEPPALS
LDDLFKKTKSKPIIYWLPLSEEVAAAARKKRKEEEAAARKAEEEEAAADQERERARHQQP
DRDRERDRAGDRGGWGALPPPPPLPGPPPARDGRGGYDRDRQGYGRDRR
NT seq 2670 nt   +upstreamnt  +downstreamnt
atgaaggcctcggatgtgccaagcttgaaggtggcagagctcagggaggcgcttaaggag
cgtggcctctcgacaacagggacgaaggccgtgcttgcggaacgtttgctgacagctcta
gctgcggaggagaaggacggcaagggtgcttcggactccccttctggcaagggcgactcc
tcttccgaagacgccgccgacgctcctgagcccaagggcacaacacaggtcgaagcgcaa
acccagcccaccccatccaaaactgccgacaaagccgcgccagcagccagagcaacagcg
aaacccgcaccgtccgatgagcctaaggcgccagaggaagacaagcaaggcgcagcgtct
gttaaccccggggcggactctgaaccccccttagcagcagaagcaccggcagcatcggta
ggagcagcagagaactcagcccgctcacctgcaaagtctaacgacccggaagacgaacag
cctagggcggccggcgacggcgaagaccagcccgaagctgctaaggccaaagaggttgtg
gaagacgtgaaggtggaggatgctgtgatgacggaagcgcaaccagaggccggggggggc
cctgaagcggagcacgaggaacaggtggattacggcacggatgagattacagcaccggac
gagtcggtcgaggacggagggcctcttcctccgcggacggagaagatggggctgggggaa
aaggagggaggtcagtcgcaggccgataattccgtagacgagcagcagcagcagcagcag
cagcacccgccgaagtcacaagggcgaaggacagggcaggcggacgaggatacagccatg
gcggacgctgccgccggcgatgccgccggcgctggcaaagaggcagatgcggacggtgtc
actgatggacagggcgctcccgccgatggcgggggcgaggcggcggcgccggggacggct
gtgggggcggcggcgcccctcacgacgcccccggcatcggcgggcaaagaggatgtcaag
gagtctgcggcgacggggggcagtgtgcgacaggacgccggtacgcagcagcctagtgca
gcggtggtaaccaccaagccgccggcgaggccggacccaacgccgccgccagccgccggc
agcggcagaaagcggcagccgatagagtttaagatggatgaggtcgaacagcgagtggca
gcgaagcgtgcagccagggaggcgacggcaggggagggcgtgggggcggcatcgccggcc
gaggagaagatcacgcccgcatcagggcctgcggtaacggctgcgccagcaggcaaggcg
cagtcttcagcggcagcagcagcaacaccaccggaagcaaccacgaaggtgcaggcgcag
gctgtcacggagaaggacgtcccggcagcggcgccgccggtgccggaggcgccggaggtt
cctgcggtggcggcggctgcggcggcagctaccgagcgggctgccaagcttcagaagttg
gacgcggcagggcgcaaggcggctgggctggtgggtgctgcaagaccagcgggaggagca
cctgcggggccaaagggtggtggtggtggtgcggcggcggcgacggtggcggccaagagg
ctgtctgcgccgccgccgctggagggcccagctacgagggcgctgcgcatcgacggcttt
gtgcggccgttcactgaaaaccaggtacggcaatttatgtcgcaacatggcactgtcgag
gatctctggatgcccaccattaagaactactgttacgtggtctttgcggaggtgacgcat
ggagaggcagcggcggccgccaccaacggcgtcgtgtggccttctggcaatcccaccagc
atactgaagcccagctacgtgtccccagaagatgccgcaacggccatcgctaacgggcgc
gcgggcctgatggatccgcccaaaggaggcggcgccgtcgggggccccctgaagtccccc
ggaacggcggcggcagccgctggcggcggcggcagtggcagtacactggcatcgccaaag
gggggcccggcaccagcaccgctggcggtggtcggtgcggctggagtacgtcgcgacacg
ctgacggcggcggtagcggcggccgcggccgatgcagcggcagcgaaacagaagacgccg
gcggcggcagtggccgctggtgcgaataccgccgctggtcggaagcgatccgaaccggag
ggggagttgccgccagcggccgctgacgccagcacaggcgacgcaggggacaacgcggca
gcggcgcagccggcggcggtcgccgaggtcgtcgctgctccggagccgccggcgctttca
ttggacgacttgttcaagaagaccaagtccaagccgatcatctattggctcccgctttcg
gaggaagtggcggcggcggcgcggaagaagcggaaggaggaggaggccgcggcgcgcaag
gccgaggaggaggaggccgcggctgatcaggagcgagagcgggcgcgccaccagcagccg
gatcgtgaccgtgagagggacagggcgggggatcgcggcgggtggggagccctgccaccg
ccgccaccgctgccgggaccgccgccggcacgggacggccgtggggggtacgacagggac
cggcaggggtacggcagggatcgcaggtaa

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