Vibrio cholerae O1 O395: VC0395_0429
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Entry
VC0395_0429 CDS
T00520
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vco
Vibrio cholerae O1 O395
Brite
KEGG Orthology (KO) [BR:
vco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vco03016
]
VC0395_0429 (rnb)
Enzymes [BR:
vco01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
VC0395_0429 (rnb)
Transfer RNA biogenesis [BR:
vco03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VC0395_0429 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
ABQ18712
UniProt:
A5F0G1
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All DBs
Position
1:complement(474288..476324)
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AA seq
678 aa
AA seq
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MFQDNPRLAQLKQKIQETLPKKEGTIKASDKGFGFLEVDSKTSYFVPPPYMKKCMHGDKV
VAFIRTENEREVAEPSELIEQSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLN
EADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNSEPAGI
DDWQLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYIT
PEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGD
DIRFFAANIKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQARANWCETHA
VVFPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVFNT
HAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQSY
SEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAPVQTPDETVGEELAL
HRKHHKIAERNVADWLYARTLADEPAKETRFQAEIFDINRPGMRVRLLENGAMAFIPGAL
ILDNKERIECNGEDGTILIDKEVVYKLGDVLEIVLTEVNQENRSLVGKPTQVFADLVSET
QTSTEQPAEGAENNEPQA
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgttccaagacaatccgcgcctcgcgcagcttaagcaaaaaatccaagaaaccctgcct
aaaaaagaaggcaccatcaaagccagtgacaaaggttttggcttcctcgaagtcgatagc
aaaaccagctactttgttccgcctccttatatgaagaagtgtatgcatggcgacaaagtc
gtggctttcatccgcaccgaaaatgaacgcgaagtggctgagccttctgaactcatcgag
caatcgctgactcgcttcattggtcgcgtaaagctatttaaaggcaaactcaacgtcgct
cccgatcatccacaactgaaaaagctgtcgctgaaggcaaaaaccaagaaaggcctcaac
gaagctgacttccaagagggtgactgggtggtcgctcatcttgtgcgccacccgctgaaa
ggtgacgatggtttctttgtgcagatttcacacaaaatcaccgatgccaatgacaaaatt
gccccttggtgggtgacattagcagaaaacgatctgcccaacagcgagccagcgggcatt
gacgattggcaactgaaagatgatgcagacttggttcgtgaagatctgaccgcgctgcct
tttgtgaccatcgatggtgaatcgaccaaagatatggacgacgcgctttacgcacagcaa
ctgccaaacggtgattttgcgctgactatcgcgattgccgatccaaccgcttacatcacc
ccagaagatgagatggacaaagtcgcacgcgagcgtggctttaccatttatttgccgggt
cgcaacattccaatgttgccacgcgatctggctgatgagctttgctctctgatggaaaac
caagttcgtccagcgctatgctgctcagtcactatccgtaaagatggcgtgattggcgat
gatattcgtttcttcgcagccaacatcaaatctcatgcacgcctagtttacgaccatgtt
tctgactggttggagactggcagctcggaacaatggcaaccaagcgaagaaatcgcccaa
gtagtgcgcgacctctacgctttctcacaagcacgtgcgaactggtgtgagacccatgcc
gtagtgttcccagatcgtccagactaccgttttgaactgagcgcagataacgatgtggtg
gcgatccatgcggacatgcgccgtacggcaaaccgcttggttgaagaatcgatgatcact
gcgaacatctgtgcgggtaaaacgctgcaaactacatttggttttggtgtattcaatacc
cacgcgggttttaaagctgaaaaaatggccgatgtagtagagctcatggcggtcaacggc
gcacccaatgcggatgcagaaacgctggcaaccgtagaaggctttgccgctctgcgccgc
tggctagccacgcaagaaaccagctacctcgataatcgtattcgtaaataccaaagctac
agtgagattggcaaccagcctctcccccacttcgcgatgggccttgatgtgtacgcaaca
tggacttcgccgattcgtaaatacggcgacatgattaaccaccgtctgctgaaagcgcac
attctcggcaaagccccggtgcaaacgccggatgagacagttggtgaagaactggctctg
caccgtaaacaccacaaaattgctgaacgtaatgtggcagattggctctatgcgcgcacg
ctggctgatgagcctgcgaaagaaacccgcttccaagctgagatctttgatatcaaccgt
ccgggcatgcgtgttcgcttactcgaaaatggcgcaatggcctttattccgggagctctg
atcctcgataacaaagagcgtatcgagtgtaatggtgaagacggcacgatactgatcgat
aaagaagtggtgtacaaacttggtgatgtgctggaaatcgtcctgacagaagtcaatcaa
gaaaaccgcagcttagtgggtaaaccaacgcaagtgtttgctgatctggtttcagagacg
caaaccagcacggagcaacctgctgagggcgcagaaaataacgagccccaagcttaa
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