Vibrio cholerae O1 O395: VC0395_0430
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Entry
VC0395_0430 CDS
T00520
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vco
Vibrio cholerae O1 O395
Pathway
vco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VC0395_0430 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vco03019
]
VC0395_0430 (deaD)
03009 Ribosome biogenesis [BR:
vco03009
]
VC0395_0430 (deaD)
Enzymes [BR:
vco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VC0395_0430 (deaD)
Messenger RNA biogenesis [BR:
vco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VC0395_0430 (deaD)
Ribosome biogenesis [BR:
vco03009
]
Prokaryotic type
rRNA helicases
VC0395_0430 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABQ18623
UniProt:
A0A0H3AFI3
LinkDB
All DBs
Position
1:476638..478629
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AA seq
663 aa
AA seq
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MVGNGKARGTLVISSFSGIPMQDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVL
LEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQN
IKGLKVLEIYGGASILDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADE
MLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMVKEIVERFLRDPECVDVAGSNQTVAKV
EQQYWVVKGVEKDEAMARLLETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIP
QSLRERTVDHIKQGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAG
RKGKAILLVRTNQIRMLRTIERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSL
ERFADLVEKLQASLEIDATTLAAILLKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDD
RRDGDRPARREFGGRDQENHDWDTYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKL
AQGHTFVQLPKAMSNDVSSKLRKLRIRQKEVGAVVCDFDDFRESRGGARREGGPRREGGR
RPEGNREGGFRGGREGGREGGRGRGGEGRPFREGERRFERNRSGESSGSYRGERGHSRRR
EEA
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
ttggttggaaatggtaaagcacgtgggaccttggttatttcttcatttagtgggatcccc
atgcaagatactgcaattcaattcagtgatttagcactgaacagcgccatcctttctgcc
ctaaccgaaatgggcttcgtatcaccaactcctatccaagcagcagcgattcctgttctg
cttgaaggccgtgatgcactgggtaaagcgcaaacaggtacaggtaaaacagcggcattc
tctttgcctctgctcaacaaacttaatctatctcagtacaagccacaagctatcgttatg
gcgccaacacgtgagctggcgattcaggtagcagccgagatcaaaaacctaggccaaaac
atcaaaggcctcaaggttcttgagatctacggtggtgcttcaattcttgatcaaatgcgc
gctctgaaatctggcgctcacatcgttgtgggtacgccgggtcgtgtaaaagatctgatc
actcgtgatcgtctacacctagacgaatgtcatactttcatccttgatgaagcagacgaa
atgctgaaaatgggcttcgttgatgacgtaacttggatcatggaacaagcgccagagtct
gcacaacgcgtactgttctcagccactatgccgccaatggttaaagaaattgttgagcgt
ttcctacgtgatccagagtgtgttgacgtagcgggctctaaccaaacggtcgcgaaagtt
gagcaacaatactgggtagtaaaaggtgtagagaaagatgaagcgatggctcgtctgctt
gaaaccgaagaaaccgatgcttctatcgtattcgtacgtactcgtcaggatactgagcgt
ctagcggattggctgtgcgcgcgtggcttcaaagcagcggctctgcacggtgatatccct
cagtctctgcgtgagcgtactgttgatcatatcaaacaaggtgtgattgatattctggtt
gcgaccgacgttgttgcacgtggtctggacgttcctcgtatcactcacgtatacaactac
gatattccatttgatgtggaatcttacatccaccgtatcggccgtactggtcgtgctgga
cgtaaaggtaaggcgatcctgctggttcgtactaaccaaatccgcatgctacgtactatc
gagcgtgtcactcgttcttcaatggaagagatccaactgccgcaccgcgataaagtggct
gaatctcgtctgactaagctgggtcaagagctggcagcagataaagagttcagttcgctg
gagcgtttcgctgatttggttgaaaaactgcaagcgtcactggaaattgatgcaacgact
ctggctgcaatcctgctgaaacgtcagcaaggtaagcgtccactgttttatgtcggcgct
gatccaatgatcgaagcgatggagcgtgaaaaatcacgtcgtcgtgagcgtcgtgatgac
cgccgcgatggtgatcgtcctgctcgtcgtgaattcggtggccgcgatcaagaaaaccac
gattgggatacttaccaactgcaagttggccgtgaccaaggcgttcaagtgaaagacatc
gttggtgctctcgcaaacgaactgggtctgactaaaggttctatcggtgcgatcaaactg
gctcaaggccatacgtttgttcagctaccaaaagccatgtcaaatgacgtttctagcaag
ctacgtaagctgcgtatccgccagaaagaagtgggtgctgtagtgtgtgacttcgatgac
ttccgcgaatctcgtggtggtgctcgtcgtgaaggtggtccacgtcgcgaaggtggtcgt
cgtccagaaggcaaccgtgaaggcggtttccgtggtggtcgtgaaggcggccgcgaaggt
ggtcgtggccgtggtggtgaaggccgtcctttccgtgaaggtgagcgtcgttttgagcgc
aaccgtagtggtgagagcagtggtagctaccgtggtgagcgtggccatagccgtcgtcgc
gaagaagcataa
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