Vibrio cholerae O1 O395: VC0395_0454
Help
Entry
VC0395_0454 CDS
T00520
Name
(GenBank) putative exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
vco
Vibrio cholerae O1 O395
Brite
KEGG Orthology (KO) [BR:
vco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vco03400
]
VC0395_0454
DNA repair and recombination proteins [BR:
vco03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VC0395_0454
Archaeal homologous recombinant proteins
VC0395_0454
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
Motif
Other DBs
NCBI-ProteinID:
ABQ18798
UniProt:
A0A0H3AEV0
LinkDB
All DBs
Position
1:504277..507318
Genome browser
AA seq
1013 aa
AA seq
DB search
MRPLKLILQAFGPFVGREEIDFTKLGDAPLFLINGATGAGKSSILDAICYALYGETTGSE
RTGDQMRCDYADPESLTEVSFEFELAGARYQITRQPDQEIPKKRGEGMTKKSHSATLVAL
KADGNELIANKPNPVAKAVIELMGLDVKQFRQVMVLPQGKFRELLTANSKEREQIFGQLF
QTQLYSQIERALFERAAGIRKEKEEFDQQIKGTLSVVGLESEEQLQTELTELAPVLTHAQ
SQLKAEQQQWDETKAHYQAALELEQQFIRKQQLVVEIATHQEQASHIEMLRQQRQQAQKA
ARLTAVHQQWHQAQKNLLQAKLKVEQQQTLLQQAKAQQQQAQQVSQQASLACEEVPKLNE
QRITWQRAEQKLLAQENVQQAVAKAERELQLATQNALNLQHASEKLEQELQNQRLEWEQQ
QRQLTRLEVQKARMNQLVQQVQAREREQSLLNELQTAQQALLRFEQQHRHIQTQAEQAKL
TADKLEFAWHTQRAAELALALTQNEPCPVCGSLEHPNKAQYSGDVVTKVQVEKARQQQQD
WVQRQQEAFHAWQQQGFKTEQIAQNLTTLSSELTLQQVALLNELIEQQQILHSDIAALQQ
LNPDLLKRQIEEGEQRLAHTKMTLEKQNQNQQQAWQTLAQLQAELASLRQEIPPELSNLD
TLRSAIGRVQNQIEILQKAEHTAREQWVQAQKQFASVQAAHQAAIEAHRESQRQQEETTS
AWQQGLLHSGFNDESAYLAARLTDEAIGNIERQIAQYEERSAMLSGEQQALSRKLAEKNR
PELEPLLVKVTQAEEKMELALQAFTQHQSRMDGLQRVAKQLADLYQKNRALEAEYQVVGT
LSDIANGKTGAKVSLHRFVLGVLLDDVLLQASQRLMKMSRGRYLLKRKEERAKGNVGSGL
DLMVEDSYSGKWRDVATLSGGESFMAALSLALGLSDVVQAYSGGIRLDTLFIDEGFGSLD
PESLDLAIQTLIDLQQGGRTIGIISHVTELKEQIGLRLDVLATRMGSTLRLIT
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgcgtccgttaaaacttatcctccaagctttcggcccttttgttggacgagaagagatt
gactttacgaagttgggtgatgctccactgtttttgatcaatggggcaacgggagccgga
aaaagctcgattctggatgcgatttgctacgccttgtatggcgaaaccacgggcagtgag
cgtactggcgaccaaatgcgctgcgattatgcggatcctgagtctctcaccgaagtcagt
tttgagtttgagctggccggggcgcgttatcaaatcacccgtcagcccgatcaagagatc
ccgaaaaaacggggtgaagggatgacgaagaaatcccattccgctactttggttgcactg
aaagcggatggaaacgagctgattgccaacaagcccaatcctgtcgcgaaggcggtgatc
gaattgatgggacttgatgttaagcaatttcgccaagtcatggtgttgcctcaaggcaag
tttcgtgagcttttaaccgccaattcaaaagagcgtgagcagatttttggtcagctcttt
caaacccagctctacagccaaattgaacgggcgctgtttgagcgcgccgcgggtattcgt
aaagagaaagaagagtttgatcagcagatcaaaggtacgttaagtgtcgtcggactggaa
agtgaagagcagttacaaaccgagttgaccgaactggccccagtattaacccatgcgcaa
tcacaactcaaagctgagcaacagcagtgggatgaaacaaaagcgcactatcaagctgcg
cttgagttagaacaacaatttatccgcaagcagcaattggtggtagaaatcgccactcac
caagagcaggcttcgcacatcgaaatgctgcgccagcaacgccagcaagcccaaaaagca
gcgcgtttaaccgccgtccatcaacagtggcaccaagctcaaaaaaacctactgcaagct
aagcttaaggttgagcagcagcagactctgttgcaacaggcgaaagctcagcagcaacag
gctcaacaggtcagtcagcaagccagtttagcctgtgaagaagtaccaaaattaaacgag
caacgcatcacgtggcagcgtgctgagcaaaaattgctggcacaagaaaatgttcagcaa
gcggtggccaaggctgagcgtgaactgcaactggcgacacaaaatgcgcttaatttgcag
catgcgagcgaaaagctagagcaagagctacaaaaccaacgactcgaatgggaacagcaa
cagcgccaattaacgcgcttagaagttcaaaaagcgcgaatgaatcagttggtgcagcaa
gttcaggctcgcgagcgagaacaatccctactcaatgaattacaaactgctcaacaagct
ttattgcgctttgagcagcaacatcggcacatccaaactcaggccgaacaagcgaaactg
accgcggataaactggagtttgcatggcatacccagagggctgcggagcttgctcttgca
ctcacacaaaatgaaccttgtccggtatgcggcagtttagagcatcccaataaagcgcaa
tattcgggtgacgttgtcaccaaggttcaggttgaaaaagccagacagcagcaacaagat
tgggtgcagcgtcagcaagaggcattccatgcttggcagcaacaagggtttaaaaccgag
cagatagcgcaaaatctcacgactttatcgagtgagctaactttgcagcaagtggcgtta
ttgaacgagctcattgaacagcaacaaatactgcacagtgatattgctgcgctacaacag
cttaatcctgatttgctgaaacggcagattgaagagggggagcagcggttagcgcacacc
aaaatgacgctcgaaaaacagaatcaaaaccagcaacaagcttggcagactttggctcag
ttacaggcggaattggcaagtttgcgccaagaaatcccgccggagctgtccaatcttgat
actttacgaagcgcgatcgggcgtgtgcagaaccaaatagaaatcttacaaaaagcggaa
catacggctcgtgaacagtgggtgcaggcgcaaaagcagtttgccagtgtgcaggccgct
catcaggcggcgattgaagcgcaccgtgagtctcagcgtcagcaggaggaaaccacaagc
gcatggcagcaagggttactccattctggatttaacgatgagtccgcctatcttgccgct
cgtttaaccgatgaggctatcggcaatatcgagcgccaaatcgcccagtatgaagagcgc
agtgcgatgctcagtggcgaacagcaagccttatcacgtaaattagcagagaaaaatcgc
ccagagctggaaccacttcttgtcaaagtaactcaagctgaagaaaaaatggaactggcg
ttgcaggcgtttacgcaacatcaatcgcggatggatggattgcaacgtgtcgccaagcaa
ctggcggatctttaccagaaaaatcgtgcattagaagccgaatatcaggtcgtgggtacc
ttaagtgatattgcgaatggcaaaacgggcgctaaagtcagcttacatcgctttgtgctt
ggtgttttgctggatgatgtcttgttacaagcttctcaacgactgatgaaaatgagccga
ggccgctatttactcaaacgtaaagaggaacgcgctaaaggtaatgtaggctcagggctg
gatttgatggtcgaagatagctacagcggtaaatggcgtgatgtggcaaccttgtccggt
ggtgaatcgttcatggccgccttatcgcttgcgcttggtttatccgatgtggttcaggct
tacagtggtggtatccgtcttgatactctgtttattgatgaaggttttggtagtttggat
ccggaatctttagatttagcgatccaaaccctaatcgatcttcagcaaggtggtcgaacg
atagggatcatctctcatgttaccgagctgaaagagcagatcggtctaagattggatgtg
ttggcgacaagaatgggtagcacgctgcgtttaatcacataa
DBGET
integrated database retrieval system
