Vibrio cholerae O1 O395: VC0395_A0178
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Entry
VC0395_A0178 CDS
T00520
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vco
Vibrio cholerae O1 O395
Pathway
vco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VC0395_A0178 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vco03019
]
VC0395_A0178 (pnp)
03016 Transfer RNA biogenesis [BR:
vco03016
]
VC0395_A0178 (pnp)
Enzymes [BR:
vco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
VC0395_A0178 (pnp)
Messenger RNA biogenesis [BR:
vco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VC0395_A0178 (pnp)
Transfer RNA biogenesis [BR:
vco03016
]
Prokaryotic type
tRNA degradation factors
VC0395_A0178 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
OB_RRP5_4th
S1_RRP5
aRib
KH_2
KH_SLS1_2
KH-I_KHDC4-BBP
DUF3016
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
ABQ21149
UniProt:
A5F913
LinkDB
All DBs
Position
2:181032..183170
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AA seq
712 aa
AA seq
DB search
MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL
TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS
VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV
AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN
TELKAKVAALAETRLVEAYQITEKMARYDRIHAISSEVTAALLAENEALDTKEIHTIFHD
LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ
RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE
EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS
DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ
AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA
TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV
EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETSDAAAEVAPQAAPQAE
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaaaaaccagtagtaaaaacgtttcagtacggtaaccacaccgttactctcgaa
acgggtgtaatggctcgccaagcaacggcagcagtaatggctaccatggatgacactgcg
gtgtttgtctctgtggtcggtaagaaagaagcggtagtgggtcaagatttcttccctctg
actgtaaactaccaagagcgtacttacgcggcaggtaaaatccctggcggtttctttaag
cgcgaaggccgtccttctgaaggcgaaacgctgattgctcgtctgattgaccgtccaatt
cgtccgctgttccctgatggtttcactaacgaagtgcaagtgatcgcgactgtggtttca
gtaaacccagacgtgcaacctgacatcatctcgatgatcggtacttctgcagcactggcg
atttctggactcccattcaatggtccaatcggtgcggctcgcgtaggtcacattgatggt
caattggttctgaacccaagtgaaaaagagctgaaacagtctcgtttggatctggtggtt
gcgggtactgacaacgcagtactgatggtggaatcagaagcacaaattctgactgaagaa
gagatgctggctgccgttgtgtttggtcatgatcaacaacaagccgtgatcaaagcaatc
aatgaattcgcagcggaagtggcaacaccagcatgggaatgggttgcaccagccgagaac
actgagctgaaagcgaaagtggctgctctggcagaaactcgtttggtggaagcgtaccaa
atcactgagaaaatggcgcgttatgatcgtatccatgcaatcagttcagaagtgacggcg
gctctgctggctgaaaacgaagctttagacaccaaagaaattcacaccattttccacgat
ctggaaaaaaccgttgttcgtcgcagcatcatcgcgggtaacccacgtatcgatggccgt
gaaaaagacatggttcgtgctctggacgttcgtactggcgttctaccacgtactcacggc
tctgctctgttcacacgtggtgaaactcaggctctggttacagcaactctaggcactcaa
cgtgatgcgcaaatcatcgatgagctgactggcgagaagaaagatcacttcctactgcac
tacaacttccctccatactgtgtgggtgaaacgggttttgtgggttctcctaagcgtcgt
gaaatcggtcacggccgtttggcgaagcgtggtattgctgcggttatgccatcaccagaa
gagttcccgtacacagttcgtgtcgtttctgaaatcacggaatctaacggttcatcttca
atggcttctgtgtgtggttcatcgcttgctctgatggatgctggtgttccaatcaaggct
tctgttgcgggtatcgcaatgggtctggtgaaagaagaaaatgattttgtggttctgtct
gacattctgggtgatgaagatcacctaggcgacatggactttaaagtcgcaggtaccgcg
acaggtgttactgcactgcagatggacatcaagatcgaaggcatcaccaaagagatcatg
caaatcgctctgaaccaagcgaaaggtgctcgtctacacattctgtctgtgatggatcaa
gcgatctctgcagcgcgtagcgatatctctgaatttgcgccacgtatccacacgatgaag
atcagcgttgagaagatcaaagacgtgatcggtaaaggtggtgcggtaattcgtcagttg
acggaagaaacgggtaccaccatcgagatcgaagatgacggcacgatcaagattgctgcg
actgacggcgatcaagcgaaagaagcgatccgccgtattcaagagatcaccgccgaagtt
gaagtgggcgtgatctacactggtaaagtagctcgtttggcagactttggtgcgtttgta
acgattcttcctggtaaagatggtctagtacacatctctcaaatcgctgacaagcgcgta
gagaaagtgtctgactacctgactgaaggccaagaagttcaagttaaagtgctggaaatc
gaccgccaaggccgtgtacgtctaagcatgaaagaagcggttgaaacttctgatgcagca
gcagaagtggcaccacaagcggcaccacaagcggaataa
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