Vibrio cholerae O1 O395: VC0395_A1504
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Entry
VC0395_A1504 CDS
T00520
Symbol
hipB
Name
(GenBank) integration host factor, beta subunit
KO
K05788
integration host factor subunit beta
Organism
vco
Vibrio cholerae O1 O395
Brite
KEGG Orthology (KO) [BR:
vco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vco03032
]
VC0395_A1504 (hipB)
03036 Chromosome and associated proteins [BR:
vco03036
]
VC0395_A1504 (hipB)
03400 DNA repair and recombination proteins [BR:
vco03400
]
VC0395_A1504 (hipB)
DNA replication proteins [BR:
vco03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
VC0395_A1504 (hipB)
Chromosome and associated proteins [BR:
vco03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
VC0395_A1504 (hipB)
DNA repair and recombination proteins [BR:
vco03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
VC0395_A1504 (hipB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_1
DUF4777
HU-CCDC81_euk_2
Glycos_trans_3N
HU-DNA_bdg
HAAS
Ybfg_C
Motif
Other DBs
NCBI-ProteinID:
ABQ20270
UniProt:
A5F6Y4
LinkDB
All DBs
Position
2:complement(1616350..1616628)
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AA seq
92 aa
AA seq
DB search
MTKSELIERLCAEQTHLSAKEIEDAVKNILEHMASTLEAGERIEIRGFGSFSLHYREPRV
GRNPKTGDKVELEGKYVPHFKPGKELRERVNL
NT seq
279 nt
NT seq
+upstream
nt +downstream
nt
atgactaagtccgaactgatagaaagactctgtgccgaacaaacgcacttgtctgcgaaa
gagatcgaagatgcggtaaaaaatatccttgagcatatggcctcaacgttagaagcgggg
gagcgcatcgagattcgtggtttcggtagcttttccttacactatcgtgagccgcgtgta
gggcgtaatcctaagactggcgataaggtggagttggaaggtaagtacgttccgcatttc
aaaccaggtaaggaactacgcgaacgcgttaacttgtaa
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