Vibrio cholerae O1 O395: VC0395_A1836
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Entry
VC0395_A1836 CDS
T00520
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vco
Vibrio cholerae O1 O395
Pathway
vco03030
DNA replication
vco03430
Mismatch repair
vco03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VC0395_A1836 (dnaE)
03430 Mismatch repair
VC0395_A1836 (dnaE)
03440 Homologous recombination
VC0395_A1836 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vco03032
]
VC0395_A1836 (dnaE)
03400 DNA repair and recombination proteins [BR:
vco03400
]
VC0395_A1836 (dnaE)
Enzymes [BR:
vco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VC0395_A1836 (dnaE)
DNA replication proteins [BR:
vco03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VC0395_A1836 (dnaE)
DNA repair and recombination proteins [BR:
vco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VC0395_A1836 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ABQ21609
UniProt:
A0A0H3AML6
LinkDB
All DBs
Position
2:complement(1951075..1954569)
Genome browser
AA seq
1164 aa
AA seq
DB search
MDTPCMSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYS
TAHNCGVKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPV
IDKAWLVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGR
ADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYS
PKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLVMK
SREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDND
IPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVI
DHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAF
IAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGN
FPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDAR
SFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRK
HGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK
KPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK
THYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGI
GAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHR
AAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERE
TLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGL
MTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSA
REKFARGLSISILQSQIDQQFFERFSHILEPHRAGTVPVNVYYQRPDARARLTLGTEWRV
TPSDTLLDELKQLLGHDQVELEFN
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
ttggatactccttgcatgtcagacccaaagttcatccacttacgtatacacagtgatttc
tctatggtggatggtttgtccaaagtcccgccattggtgaaaaaagtggcggcaatgggc
atgcccgcaatggccttgaccgatttcaccaacctgtgtggcttggtgaagttttacagc
accgcgcataactgcggggttaagccaatcattggcgccgactttactttgcaatcggaa
gagttcggtgatgagctgaccaaactgaccttgcttgctaaaaacaatgtcggttacaaa
aacctcaccttattgatttctaaagcctatttacgcggccatgtccagcatcaacctgtg
attgataaagcgtggttggtcgagcatgccgaagggctgattgtgctctcgggaggcaaa
agtggcgaagtggggcgcgcattactcaaaggcaaccaacaacaagtagaaagatgcatt
gagttttaccaaactcactttgccgatcatttctatctagagcttatccgcactggccgt
gctgatgaagagagctacttacattttgcgctggatgtggcagagcagtacgacttgccc
gtcgtggcaaccaacgaagtggtgttcatcactgaagagtcgtttgaagcccacgaaatc
cgagtcgcgattcacgatggttatacgctggaagatccacgccgtccgaaaaattacagt
ccgaagcagtatctgcgcagcgaagcggagatgtgtgagctgtttgcagacattccagaa
gcgttagccaacagtgtcgagattgccaaacgttgtaacgtgaccgtacgtttgggcgaa
tatttcctacctaacttcccaacgggcgggatggcgattgaagattttctggtgatgaaa
tctcgcgaagggttggaagagcgactcgaatttcttttcccagatccagaagttcgtgcc
aagcgtcgccctgaatatgatgagcgtttgcaagttgagctcgatgtgattaaccagatg
ggctttcccggatacttcttgatcgtgatggagtttatccagtggtcaaaagataacgat
attccagtcggtccgggacggggctcgggggcgggctcattggtagcgtatgcactgaaa
atcaccgaccttgatccgctggaatacgatctgctgttcgagcgtttcttgaatccagag
cgggtctccatgcccgacttcgacgtcgatttctgtatggataagcgtgatcaagtaatt
gatcacgtagcggaaatgtatggtcgtgatgcggtatcacaaatcatcactttcggtacc
atggcggcgaaagcggttattcgcgatgtggggcgtgtacttggtcatccgttcggtttt
gtcgatcgcatttccaaattagtgccacccgatccgggtatgacgctcgagaaagccttt
atcgccgagcctgcactgcaagagctgtatgacgcggatgaggaagtcaaagagctgatc
gacaagtgtcgaattctggaaggctgtacccgtaacgctggtaaacacgctgggggcgtg
gtgatttcgcccactgccatcactgactttgcgccgatttactgtgatgcggaaggcaac
ttcccggttactcagttcgataagaacgatgtggaaactgccggtctggtcaaatttgac
ttcttggggctgcgtacccttaccattattgactgggctttgggcttagtgaacccgcgt
ttgaaaaaggcgggcaaaccccccgtgcggattgaagcgatcccgctcgacgatgcgcgc
tctttccgtaacctgcaagatgccaaaaccaccgcggtattccagctcgaatcgcgcggt
atgaaagagctgattaagcgactgcaacccgactgttttgaagacatcatcgctctggtg
gcgctgtttcgtccggggccgttgcaatccggcatggtggataactttatcgaccgtaag
catggccgagaagccatctcttatccggatgaaaagtggcaacatgaatcgctcaaagag
atcctagaaccgacctacggcatcatcctctatcaggagcaggtgatgcagatcgcgcag
gtactgtcgggttacaccttgggtggggcagacatgctgcgccgtgcaatgggtaagaaa
aagccagaagaaatggctaagcagcgcgctgtgttccaagaaggggcggagaaaaatggc
gtcgatggtgagttggcgatgaaaatcttcgatctggtggaaaaattcgccggatacgga
tttaacaaatcgcactctgccgcttatgcgctggtttcctaccaaaccttatggttgaaa
acccactatccagccgagtttatggcggcggtaatgaccgcggatatggacaacacggaa
aaagtggttggcctagtggatgagtgtaaaaacatgggattgaccgtgttgccaccggac
attaactcgggtctttatcgctttaacgtcgatgacaacggcgcgattgtttatggtatt
ggcgcaattaaaggggtgggtgaaggtccgattgaagcgattttggaagcgcgcaacaaa
gggggatatttcaaagatctgtttgatttctgcgcgcggattgatctgaaaaaggtcaac
aaacgggtaattgaaaaactgatcttggctggcgccctggatagattaggcccgcatcgc
gcagccatgatggcctcagtggatgatgcggtgcgtgcagcaagccaacatcaccaagcg
gaagcgtttggacaagcggatatgttcggtgtgctcacggatgcgccagaagaagtcgag
cagaaatacacgcaagtgccagaatggccagaaaaagtgcgtttggaaggggagcgcgag
acgcttgggctctatctcaccggccatccggtggatgaatacctgaaagagctcaccaaa
tacaccagttgccgtttgaatgaagccgcaccaacccggcgtgatcaatccttaaccgtt
gccggattggtgattgcagcgcgggtgatgaccaccaaacgtggcacgcgaattggttta
atgactttagatgaccgctcgggccgtatggaagtgatgctttactcggaagcactcgat
cggtatgcagaatggttagaaaaagataaaattctggtggtttccggacaggtcagcttt
gatgacttcaatggcggacttaaaatgtcggcgcgcgaggtcatggacttgggcagcgcg
cgtgaaaaatttgcccgcggtttatcgatctcgattttacagtcgcagattgatcaacaa
ttttttgagcgttttagtcacatactggaacctcaccgcgcaggaaccgtacctgtcaat
gtatactaccagcgccctgatgcgcgagcgcgcctgacgttaggcacagagtggcgagtt
acgccaagcgatacattgttagacgaattaaagcagctacttggtcatgatcaggtagaa
ctcgaatttaactaa
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