Vescimonas coprocola: MM50RIKEN_05940
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Entry
MM50RIKEN_05940 CDS
T07634
Symbol
polC
Name
(GenBank) DNA polymerase III PolC-type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
vcop
Vescimonas coprocola
Pathway
vcop03030
DNA replication
vcop03430
Mismatch repair
vcop03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vcop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MM50RIKEN_05940 (polC)
03430 Mismatch repair
MM50RIKEN_05940 (polC)
03440 Homologous recombination
MM50RIKEN_05940 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcop03032
]
MM50RIKEN_05940 (polC)
03400 DNA repair and recombination proteins [BR:
vcop03400
]
MM50RIKEN_05940 (polC)
Enzymes [BR:
vcop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MM50RIKEN_05940 (polC)
DNA replication proteins [BR:
vcop03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
MM50RIKEN_05940 (polC)
DNA repair and recombination proteins [BR:
vcop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
MM50RIKEN_05940 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
RNase_H_2
tRNA_anti-codon
DUF1542
Motif
Other DBs
NCBI-ProteinID:
BCK80831
UniProt:
A0A810Q5X4
LinkDB
All DBs
Position
613291..617238
Genome browser
AA seq
1315 aa
AA seq
DB search
MREQIAFFDFFENFVPHRELRLLLHDAVVTGGALDVKRRALELDVAAGERIPEAAQTALE
QLLSQQYGLHRLHLTIHDRKAEKKSGGTEVLLGKEIKGKPVSMTELNVKMGTAIVEGKVF
AAECRETKRPGMWMLSFDMTDYQSSVTVRKYTEGQEALALQSAIAPGMWLRVQGQPELTR
DGKDIQLKPYHIMKVPHEGRKDTAPEKRVELHLHTKMSNMDALTDTASVIKQAISWGHPA
IAITDHGVAQSFPDAWHTAKGKIKILYGVEGYYVNNLDDRIAVHGPQDQNFADEIVCFDI
ETTGLKVEREAITEIGAVVLRNGEVAERFQTFVNPNRRLTPEIVGLTGITDAMLADAPQL
KEALTSFLEFVGDRPLAAHNAEFDISFIRAGCRKVGLPFDPTYVDSLILAQNLLPELHKY
KLDIVAEHLDLPAFNHHRASDDAAMVAYMLIPFFEKMERELGIHRLQEINGEMLKLRPQG
SKTSRFPKHIIILAKNKLGLKHLYQLISASNLKYFKRVPIIPKTELITHREGLIIGSACE
AGELFRAVTDHKDWAELKRIASFYDYLEIQPICNNLFMLRNGDVQSEEELREYNRTIVRL
GEELHKPVCATGDVHFQEPEDEIYRHVLLASKKFPDADAPLPIYFKTTDEMLEEFSYLGE
DKAYEVVVTNPRHIADLVEEIELLPPGQLFPPRLENSEEDLNRLVWDKCHELYGDQPPQL
IVDRLNVELGSILGKYDVVYMSAQKLVQRSLENGYLVGSRGSVGSSLVAYMSGITEVNSL
PPHYRCPKCRHSEFITDGSFGCGADMPDKVCPVCGEQYVKDGFDIPFETFLGYGGGKVPD
IDLNFSGEYQARAHRHAVEMFGETQVFRAGTIGTLKDKTVYPFVKHYLEENGREVSRAEE
NRLIQGCVGVRRTTGQHPGGLVVVPDDMDVEDFTAVQHPADAEDADTITTHFEYHCMEDN
LLKLDMLGHDDPTMIRMLEDLTGVNARQIPLDDPDTMSIFVSSKVLGFENDELLGPTGAV
AIPEFNTRFTRGMLMDTLPKDFNTLVRLSGFSHGTDVWLGNARELIVSGTASVLETVGCR
DDIMLYLISMGLDPKMSFKIMEAVRKGKVKKGGFQEGWVEAMQEHNVPQWYIDSLAKIGY
LFPKAHAVAYVMMAFRIAWFKVHRPLAFYATFFTVRAKAFDAEYCCAGIDAVKQKIREIE
NNKDATAVEKNLMVTLEVCYEFYLRGFHFDTISIYDSDATAFKITENGLLPPFISVRGLG
ESAALDTVEKRKGKRFISVEEFSTCCNKLSKTHIEQLKALGSFAGMADTSQITLF
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atgagggaacagattgcattttttgatttttttgaaaacttcgtgccgcatagagaactg
cgactgttgcttcacgacgccgtcgtcaccggcggagcgctggacgtgaagcggcgggcg
ctggagctggacgtggccgccggggagcgcatcccggaggcggcccagacggcgctggag
cagctgctgagccagcagtacggcctgcaccggctgcatctcaccattcatgaccggaag
gcggagaagaaaagcggcggcaccgaggtgctgctgggcaaggagatcaagggcaagccc
gtctccatgacggagctgaacgtgaaaatgggtacggccatcgtggagggcaaggtcttt
gccgccgagtgccgggagaccaagcgtcccggtatgtggatgctgagcttcgacatgacg
gactatcagagctccgtcaccgtgcgtaaatataccgagggacaggaggcactggcccta
cagagtgccatcgcccccggtatgtggctgcgggtgcaggggcagccggagctgacccgt
gacggcaaggacattcagctcaagccctaccatatcatgaaggttccccatgagggccgc
aaggacacggccccggagaagcgggtggagctgcacctgcatacgaagatgtccaacatg
gacgccctgacggacacggcctccgtcatcaagcaggccatctcctgggggcatcccgcc
atcgccatcaccgaccacggcgtagcccagtccttcccggatgcatggcacaccgccaag
gggaagatcaagatcctctacggcgtggaggggtattatgtcaacaacctcgacgaccgc
atcgccgtccacggtccgcaggatcagaattttgccgacgagatcgtgtgcttcgacatc
gagaccacgggcctgaaggtggagcgggaggccatcacggaaatcggcgccgtggtgctg
cgcaacggtgaggtggcggagcggttccagaccttcgtcaaccccaaccgccgcctgacg
ccggagatcgtgggcctgacgggcatcacggatgccatgctggccgacgctccccagctg
aaggaggccctgacgagttttctggagtttgtgggggatcgcccgctggcggcccacaac
gccgaatttgacatcagcttcatccgggccgggtgccggaaggtgggccttcccttcgat
cccacctatgtggactccctgattttggcccagaacctgttgccggagctgcacaagtat
aagctggatattgtggcggagcatctggatctgcccgccttcaaccaccaccgggcctcg
gacgatgcggccatggtggcctatatgctgatccccttcttcgagaagatggagcgggaa
ttgggcatccaccgcctgcaggagatcaacggggagatgctgaagctgcggcctcagggc
agcaagaccagccgcttccccaagcacatcatcattctggccaagaacaagctgggcctc
aagcacctgtatcagctgatctccgcttccaacctgaaatacttcaagcgggtgcccatc
atccccaagacggaactcattacccaccgggaggggctgatcatcggctcggcctgcgag
gcgggcgagctgttccgggcggtgacggatcacaaggattgggcggagctcaagcgcatc
gcctccttctacgactatctggagatacagcccatctgcaacaatctcttcatgctgcga
aacggcgacgtgcagtcggaggaggagctgcgggagtataaccgcaccatcgtccggctg
ggggaggagctgcataagcccgtctgcgccaccggcgacgtgcattttcaggagccggag
gacgagatctaccgccatgtgctgctggccagcaagaagttccccgatgccgatgcgccg
ctgcccatctacttcaagaccaccgacgagatgctggaggagttctcctatctgggggag
gacaaggcctatgaggtggtggtgaccaatccccgccatattgcggatctggtggaggag
atcgagctgctgccgccgggccagctgttcccgccgaggctggaaaactccgaggaggac
ctgaatcgtctggtgtgggacaagtgccatgagctgtacggcgaccagccgccccagctg
atcgtggaccgcctgaatgtggagctgggcagtattctgggcaagtacgacgtggtgtat
atgtcggcccagaagctggtgcagcggagcctggaaaacggctatctggtaggctcacga
ggctctgtgggctcgtcgctggtggcctatatgtcgggcatcaccgaggtcaattccctg
ccgccccactaccgctgccccaagtgccgccattcggagttcatcaccgacggcagcttc
ggctgcggcgccgatatgccggataaggtctgccccgtctgcggggagcagtacgtcaag
gacggcttcgacatcccctttgagacgttccttggctacggcggcggcaaggtgccggat
atcgacctgaacttttccggggaatatcaggccagagcccaccgccacgccgtggagatg
ttcggtgagacgcaggtgttccgggccggtaccatcggcaccctgaaggacaagacggtg
tacccctttgtcaagcactatctggaggagaacggccgggaggtgtcccgtgccgaggag
aaccgcctcattcagggctgcgtaggcgtgcggcgcaccacgggccagcaccccggcggt
ctggtggtggtgccggatgacatggatgtggaggatttcaccgccgtgcagcacccggcg
gatgccgaggacgccgataccatcaccacccattttgaataccactgcatggaggataac
ctcctgaagctggatatgctgggtcacgatgaccccaccatgatccggatgctggaggat
cttaccggcgtcaacgcccgccagatcccgctggacgatccggacaccatgagtattttc
gtctcctccaaggtgctgggctttgaaaacgatgaactgctgggccccaccggtgccgtg
gctatcccggagttcaacacccgcttcacccgtgggatgctgatggacaccctgcctaag
gacttcaacacgttggtgcgtctgtccggcttctcccacggtacggatgtgtggctgggc
aacgcacgggagctgatcgtcagcggtaccgcctccgttctggagacggtgggctgccgt
gacgatatcatgctgtatctcatctccatggggctggaccccaaaatgagctttaagatc
atggaggccgtccgtaagggaaaggtgaaaaagggcggctttcaggagggctgggtggag
gccatgcaggagcataacgtcccccagtggtatatcgactcgctggccaagatcggctat
ctgttccccaaggcccacgccgtggcctacgtcatgatggccttccgcatcgcatggttc
aaggtccaccggccgctggccttctacgccaccttcttcaccgtccgggccaaggccttc
gacgccgagtactgctgcgccggtatcgacgccgtgaagcagaagatccgggagatcgag
aacaacaaggatgccaccgctgtagagaagaatctgatggtgacgctggaggtgtgctac
gagttctatctccgtggcttccactttgataccatcagcatctacgactccgacgccacc
gccttcaaaatcacggagaacggcctgctgccgcccttcatctccgtccggggactgggc
gagtcggcagctctggacaccgtggaaaagcgcaagggaaagcgcttcatctcggtggag
gagttctccacctgctgcaacaagctctccaagacccatatcgagcagctgaaggcgctg
ggctccttcgcaggcatggcggataccagccagatcaccctgttctga
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