Vescimonas coprocola: MM50RIKEN_10000
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Entry
MM50RIKEN_10000 CDS
T07634
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vcop
Vescimonas coprocola
Pathway
vcop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MM50RIKEN_10000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcop03019
]
MM50RIKEN_10000
03009 Ribosome biogenesis [BR:
vcop03009
]
MM50RIKEN_10000
Enzymes [BR:
vcop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MM50RIKEN_10000
Messenger RNA biogenesis [BR:
vcop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MM50RIKEN_10000
Ribosome biogenesis [BR:
vcop03009
]
Prokaryotic type
rRNA helicases
MM50RIKEN_10000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
DUF4391
Cas3-like_C_2
Helicase_RecD
AAA_22
AAA_30
CIDE-N
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BCK81237
UniProt:
A0A810Q4Q1
LinkDB
All DBs
Position
complement(1023950..1025110)
Genome browser
AA seq
386 aa
AA seq
DB search
MDITQGAPFESFGLSEATMRAIHNKGYEVSTPVQAGCIPPMLAGKDVIAKAPTGTGKTMA
FGIPIIERIDPESEAVQAVILAPTRELAMQITEEMREVAVCHEGVRLVCLYGGQPIGKQI
NALKRRPQIVVATPGRLSDHMKRRTVVLNEVSTVVLDEADRMLDMGFIHDVRRILDKIPN
RKNLGMFSATISREVMDISWIYQRDPEEITVQATQENKPDILQYRLDVDSDAKVDAIAAI
IKKQGLERVICFCNTKGSTERLTKFLQMRGLDAQCIHGDIPQKKREEVMAQFREGKLHVF
VATDVASRGIDVDDVDAVFNFDVPEENEYYVHRIGRTGRAKRHGVAYTLLSDFPSRMRLD
DIARNTRSQIVSAKLEEDGTVVPLEK
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atggacattacacagggcgcacccttcgagagctttgggctgtcggaggcgaccatgcgt
gccatacacaacaaaggatatgaagtgagcacccccgtacaggccgggtgcatccccccc
atgctggcggggaaggacgtgatcgccaaggcccctaccggcaccggtaagaccatggcc
ttcggcatccccatcatcgagcgcatcgacccggagagcgaggcggtgcaggcggtgatc
ctggcccccacccgtgagctggccatgcagatcaccgaggagatgcgggaggtggcggtg
tgccacgagggggtgcggctggtgtgcctgtacggcggccagcctatcggtaagcagatc
aacgccctgaagcggcggccccagatcgtggtggccacgccggggcggctctccgaccac
atgaagcggcggacggtggtgctgaacgaggtgtccaccgtggtgctggatgaggcggac
cggatgctggatatgggctttatccacgatgtgcggcggatattggacaagatccccaac
cggaagaatctggggatgttctccgccaccatctcccgtgaggtgatggatatctcgtgg
atctatcagcgggatccggaggagatcacggtgcaggccacgcaggagaataagcccgat
atcttgcagtaccgcctcgatgtggactccgacgccaaggtggacgccattgccgccatc
atcaagaagcaggggctggagcgggtcatctgcttctgcaacaccaagggctccacggag
cggctgacgaagtttttgcagatgcgtgggctggacgcccagtgcatccacggagatatc
ccccagaagaagcgggaggaggtcatggcccagttccgggagggcaagctccatgtgttc
gtggccacggacgtggccagccggggcatcgacgtggacgatgtggacgccgtcttcaac
ttcgacgtgccggaggagaatgagtactacgtacaccgcatcggccggacggggcgggcc
aagcgccacggtgtggcctacacgctgctgtcggatttccccagccggatgcggctggac
gatatcgcccgcaacacccgcagccagatcgtctccgccaagctggaggaggacggcacg
gtggttccgctggagaagtaa
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integrated database retrieval system
