Vescimonas coprocola: MM50RIKEN_12280
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Entry
MM50RIKEN_12280 CDS
T07634
Name
(GenBank) DNA polymerase
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
vcop
Vescimonas coprocola
Pathway
vcop03030
DNA replication
vcop03410
Base excision repair
vcop03420
Nucleotide excision repair
vcop03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vcop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MM50RIKEN_12280
03410 Base excision repair
MM50RIKEN_12280
03420 Nucleotide excision repair
MM50RIKEN_12280
03440 Homologous recombination
MM50RIKEN_12280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcop03032
]
MM50RIKEN_12280
03400 DNA repair and recombination proteins [BR:
vcop03400
]
MM50RIKEN_12280
Enzymes [BR:
vcop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MM50RIKEN_12280
DNA replication proteins [BR:
vcop03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MM50RIKEN_12280
DNA repair and recombination proteins [BR:
vcop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
MM50RIKEN_12280
NER (nucleotide excision repair)
GGR (global genome repair) factors
MM50RIKEN_12280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
HHH_5
HHH_2
Motif
Other DBs
NCBI-ProteinID:
BCK81465
UniProt:
A0A810Q4J0
LinkDB
All DBs
Position
1270144..1272789
Genome browser
AA seq
881 aa
AA seq
DB search
MKLMVIDGNSIVNRAYYGIRPLSTRDGLYTHAIYGFLTTLQRLLDEEQPEALCVTFDRRE
PTFRHQADERYKAQRKGMPEELAMQLPYLKQVLSAMNIPQYDLTGYEADDLIGTISRRCE
AAGWDCVIVTGDKDSLQLITPHTKVKLVSTRMGQTTTKDMTEETFREQYGFAPIHMIDLK
ALMGDASDNIPGVPGVGEKTAMALVQQYHSVAELYRLLPEIDAKPGVIKKLQEGRESAEH
SRYLATIVTDAPLNFTPEDNLRRPFAPELYDLLLKLEFQKLIDRYGLTPHRDTEAAPEYT
VTVEPLETEQQAQALLAQWRQADYVTVYALPDLSVLSVQWDTGSHTSAAAELDQNRYTGD
WHALLTALFSADIRKVGHHIKDTMRALLEQDLPIEGYGFDTALAAYLLDATAGSYDLQRL
FVTYYNEELPKPLHLEPDAFAPLADTASAWAALHSYCSAVEALYETLPPKLEELGMKELY
HTVELPLCPVLARMEQRGFLVDAKALSDFGESLTGTIRQLEQRIYDAAGAPFNINSPKQL
GKVLFEDLQLPHGKKTKTGWSTNADVLEKLRWQHPIVADVLEYRQYSKLKSTYADGLLKV
IDADGRIRTSFQMTVTATGRLSSTEPNLQNIPTRTELGSQMRRMFVAAPGNLLVDADYSQ
IELRLLAHISGDEVMQQAFRSGEDFHTLTASKVFHVPPEEVTHQMRSRAKAVNFGIVYGI
SPFSLSQDIGVTVAEAKEYMERYFATYTGVRRYMTEVVEQARQQGYVATLFGRRRALPEL
KSSNFNLRSFGERVALNMPIQGTAADIMKLAMIRVEHRLSGEGLAARLIMQVHDELIVEC
PAAEAPRVEALLQEEMQGVAQLSVPLPADAHSGPDWLSAKG
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgatggtcatcgacggcaacagcatcgtcaaccgggcctattatggcatccgc
cccctgtccacacgggacgggctatatacccatgccatctatggctttctcaccaccctc
cagcggctgctggacgaggagcagccggaggcgctgtgcgtcaccttcgaccgccgggag
cccaccttccgccatcaggcggatgaacgctacaaggcccagcgcaaggggatgccggag
gagctggccatgcagctgccgtatctgaagcaggtgctctccgccatgaacatcccccag
tacgacctcaccggctacgaggccgacgatctcatcggcaccatcagccgccgctgcgag
gcggccggctgggactgcgtcatcgtcaccggcgataaggacagtctccagctcatcacc
ccccacaccaaggtgaagctggtgtccacccgcatgggccagaccaccaccaaggacatg
acggaggagaccttccgggagcagtacggcttcgcccccatccacatgatcgacctgaag
gccctcatgggcgacgcctccgacaacatccccggcgtccccggcgtgggggaaaagacc
gccatggcactggtgcagcagtatcattccgtggcggagctgtaccgcctgctgccggag
atcgacgccaagcccggcgtcatcaaaaagctgcaggagggcagggagagcgccgagcac
tcccggtatctggccaccattgtcaccgatgccccgctgaacttcaccccggaggacaac
ctccgccgcccctttgctccggagctctatgacctgctgctgaagctggagtttcagaag
ctcatcgaccggtatggcctcaccccccaccgggacaccgaggccgccccggagtatacc
gtcaccgtggagccgctggagacggagcagcaggcccaggccctgctggcccagtggcgt
caggcggactatgtgaccgtctacgccctaccggacctctccgttctctccgtccagtgg
gataccggatcgcacacctccgccgcagccgagctggaccagaaccgctataccggcgac
tggcacgccctgctgaccgccctgttctccgccgatatccgaaaagtcggtcaccacatc
aaggacaccatgcgggcgctgctggagcaggacctccccatagagggctatgggttcgat
acggcgctggccgcctacctgctggatgccaccgccggaagctacgacctccagcggctg
ttcgtgacctactataatgaagaactgcccaagcccctgcatctggagccggatgccttt
gccccgctggcggataccgcttcggcgtgggcggccctccacagctactgctccgccgtg
gaggccctgtatgagaccctgccccccaagctggaggagctgggcatgaaggagctgtat
cacaccgtggaattgcctctctgcccggtactggcccggatggagcagcggggctttctg
gtggacgccaaggcgctgtcggacttcggcgagagcctcaccggcaccatccgccagctg
gagcagcggatctatgacgccgccggggctcccttcaacatcaactcccccaagcagctg
ggcaaggtgctctttgaggatctccagctgccccacggcaagaaaaccaaaaccggctgg
tccaccaacgccgacgtgctggaaaagctccgctggcagcaccccattgtggcggacgta
ttggaataccggcagtacagcaagctgaaaagcacctatgccgacggtctgctgaaggtc
atcgacgccgacggccgcatccgcaccagcttccagatgacggtaacggccaccggccgc
ttgtcctccacggagcccaacctccagaacatccccacccgcacggagctgggcagccag
atgcgccggatgttcgtggcggcgccggggaatctgctggtggatgccgactactcccag
atcgagctgcggctgctggctcacatctccggcgacgaggtgatgcagcaggccttccgt
tccggggaggacttccataccctcaccgcctccaaggtgttccacgtaccgccggaggag
gtgactcaccagatgcgctcacgggccaaggccgtgaacttcggcatcgtctacggcatt
tcccccttctccctgtctcaggatatcggcgtcaccgtggccgaggccaaggagtatatg
gagcgctacttcgccacctacaccggcgtccgccggtatatgacggaggtggtggagcag
gcccggcagcagggctacgtcgccactctcttcgggcggcgtcgggcgctgccggagctg
aagagctctaacttcaacctccgctccttcggggagcgggtggcgctgaatatgcccatt
cagggtacggcagcggacatcatgaagctggccatgatccgggtggagcatcggctctcc
ggcgagggtctggccgcccggctcatcatgcaggtccacgatgaactcatcgtggagtgt
ccggcagcggaggccccccgtgtcgaggcccttttacaagaggaaatgcagggtgtcgcc
cagctgtccgtccccctgcccgccgatgcccacagcggccccgactggctctccgccaag
ggctga
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