Vescimonas coprocola: MM50RIKEN_13610
Help
Entry
MM50RIKEN_13610 CDS
T07634
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vcop
Vescimonas coprocola
Brite
KEGG Orthology (KO) [BR:
vcop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcop03032
]
MM50RIKEN_13610 (topA)
03400 DNA repair and recombination proteins [BR:
vcop03400
]
MM50RIKEN_13610 (topA)
Enzymes [BR:
vcop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MM50RIKEN_13610 (topA)
DNA replication proteins [BR:
vcop03032
]
Prokaryotic type
DNA Topoisomerases
MM50RIKEN_13610 (topA)
DNA repair and recombination proteins [BR:
vcop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MM50RIKEN_13610 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_Top1
HC2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
BCK81598
UniProt:
A0A810PZT5
LinkDB
All DBs
Position
1395833..1398421
Genome browser
AA seq
862 aa
AA seq
DB search
MAKKAARNLVIVESPAKAKTIGKYLGPDYEVRASMGHLRDLPKSKLGVDVEHDFEPNYRP
IRGKEELINELKKLSKASDTVYLATDPDREGEAISWHLKNLLDLSDEKAKRVTFNEITRK
VVTESIHHPREIDQDLVDAQQARRILDRIVGYELSPLLWKKIRRGLSAGRVQSVAMRLVA
DREKEIKDFVPQEYWTLDALLKNDGGVPFRARYYGKDGKKYEPVSQEEVSAIQAEVQDLP
FAVKSVKRTDKQRSPAPPFTTSTMQQDASRKLNMTPRRTMAIAQQLYEGVDITGEGTVGL
ITYMRTDSLRISDEAQAAARSFVTGRYGAGYCPAAPRQYKTKAGAQDAHEAIRPSDVNLT
PERVKSDLTSEQYRLYRLIWSRFLASQMSNAIYDSVSVELGAGAHSFRASASSLKFAGYT
AVYEESRDDEKEEKAPALPPLAQGEVVTLTGFDPAQHFTQPPARFTDASLIRAMEENGIG
RPSTYAPTVSTILDREYVIKDGKYLKMTPLGDVVNGLMCDRFKDIVDVKFTAHMEEELDE
VESGKLPWKQLLRQFYGGFESNLHQVEKDMEGVYLKVPDEVTEEKCDLCGRNMVIKSGRF
GRFLACPGYPECKFTKPLVVEMPGRRPVCGGRLMKRTGVSKKSGKQYNYYCCEKFPACSF
VTFDVPVKDDCPVCGHTMFKKSGRGFKRPFCINPACENFLPEDQRGYPKRTAASDGTESG
TNGTAADGQPTSETVQTEASDKPAAKKTATAKKTAAKKSTAKKTGTAKTAAKKSTAKTAS
KKPASAVAKAAAEQPSTEEAAEASTAVEKAAAKKATASRKAAAEKATTKKAATTKKTTTA
KKAATKKATTSAAKKADAETEE
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaaagcagcccgaaatctggtgatcgtggagtcccctgccaaggccaagacc
atcggcaagtatctgggaccggattacgaggtcagggccagtatgggacatctgcgtgac
ctgcccaaaagcaagctgggcgtggatgtcgagcacgacttcgagcccaactaccgcccc
atccggggtaaggaggagcttatcaatgagctgaaaaaactctccaaggccagcgacacc
gtatatctggccaccgacccggaccgtgagggtgaggccatcagctggcacctgaagaac
ctgctggacctcagcgacgaaaaggccaaacgtgtcaccttcaatgagatcacccgcaag
gtggtcaccgagagcatccaccacccccgtgagatcgatcaggatctggtggacgcccag
caggcccggcgtattctggaccgcatcgtgggctatgagctgtcccccctgctgtggaaa
aagatccggcggggcctgtcggcaggccgggtgcagtcggtggccatgcgtctggtggca
gaccgggagaaggagatcaaggacttcgtcccccaggagtactggacgctggacgccctg
ctgaaaaacgacggcggcgtccccttccgggccagatattacggcaaggacggcaagaaa
tatgagcccgtctctcaggaggaggtcagcgccattcaggcggaggtgcaggatctgcct
ttcgccgtcaagagcgtgaagcgcacggataagcagcgctcccccgccccgcccttcacc
acctccaccatgcagcaggatgcctcccggaagctgaacatgactccccggcgcaccatg
gccatcgcccagcagctgtatgagggcgtggacatcaccggtgagggtaccgtgggcctc
atcacctatatgcgtactgactccctgcggatctccgacgaggcgcaggcagcggcccgc
agcttcgtcaccgggcgctacggcgcaggctactgtcccgccgccccccggcagtataag
accaaggccggggcgcaggacgcccacgaggccatccgccccagcgacgtgaatctgacc
ccggagcgggtcaagagcgatcttaccagcgagcagtatcggctgtaccgcctgatctgg
agccgttttctggccagccagatgtccaacgccatctatgacagcgtcagcgtagagctg
ggcgccggagcccacagcttccgggccagcgccagcagcctgaagttcgccggctatacc
gccgtatacgaggagagccgggacgacgagaaggaggaaaaggcccccgccctgcccccg
ctggcacagggcgaggtggtgacgctgacgggctttgacccggcccagcacttcacccag
ccccccgcccggttcaccgatgcctctctcatccgggccatggaggaaaacggcatcggc
cgcccctccacctatgcgcccacggtgtccaccattctggaccgggagtacgtcatcaag
gacggcaagtacctgaaaatgacgccgctgggcgacgtggtcaacggccttatgtgcgac
cgcttcaaggacatcgtggacgtgaagttcaccgcccacatggaggaggagctggatgag
gtggagtccggcaagctgccgtggaagcagctgctgcgccagttctacggtggctttgag
tccaatctccatcaggtggagaaggacatggagggtgtttatctgaaggtccccgacgag
gtcaccgaggagaagtgtgacctctgcggcaggaacatggtcatcaagtccggccggttc
ggccggttcctggcctgccccggctacccggagtgcaagttcaccaagcctctggtggtg
gagatgccgggccgccgccctgtgtgcggcggccggctcatgaagcgcaccggtgtcagc
aagaaatccggcaagcagtataactattactgctgcgaaaagttccccgcctgctccttc
gttaccttcgacgtaccggtgaaggacgactgccctgtctgcggccacaccatgttcaag
aaatccggccgggggttcaagcgtcccttctgcatcaacccggcgtgcgaaaatttcctg
ccggaggatcagcgaggctatcccaagcggactgctgcgtccgatgggacggaaagcggg
acaaatggtaccgcagcggacggtcagccgacgtccgaaactgtccaaacggaggcatct
gacaagcccgccgccaagaaaaccgccacagccaagaaaactgcggcaaagaaaagcacc
gctaagaaaaccggcacggccaaaaccgccgccaaaaaatccacggccaagacggcgagc
aaaaagcctgcctccgccgtggcgaaggccgctgcggaacagccctctacggaggaggct
gccgaagcatccacggcagtggagaaggccgcagccaaaaaagcgacggcctccagaaag
gcggcggccgagaaggctaccactaagaaagccgcaactaccaagaaaaccaccacggcc
aaaaaggccgctactaagaaagctaccacgtctgccgccaagaaggctgacgctgaaacg
gaggaataa
DBGET
integrated database retrieval system
