Vescimonas coprocola: MM50RIKEN_21360
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Entry
MM50RIKEN_21360 CDS
T07634
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vcop
Vescimonas coprocola
Pathway
vcop03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vcop00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MM50RIKEN_21360 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcop03021
]
MM50RIKEN_21360 (rpoB)
03400 DNA repair and recombination proteins [BR:
vcop03400
]
MM50RIKEN_21360 (rpoB)
Enzymes [BR:
vcop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MM50RIKEN_21360 (rpoB)
Transcription machinery [BR:
vcop03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MM50RIKEN_21360 (rpoB)
DNA repair and recombination proteins [BR:
vcop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MM50RIKEN_21360 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BCK82373
UniProt:
A0A810QCW2
LinkDB
All DBs
Position
complement(2188808..2192485)
Genome browser
AA seq
1225 aa
AA seq
DB search
MAKDKYYGKTLRKNFARHEEVMAMPDLLEIQKKSYKWFLDTGLREVFADVASITDYAGNL
ELSFIDYSMDEKPKYDVEECKARDATYAAPMKVSVRLRNKETGEIKEQEIFMGDFPLMTH
SGTFVINGAERVVVSQIVRSPGIYYGKEIDLKTDLPLLTSTVIPYRGAWLEYETDTSEVF
WVRIDKNRKLPITCLIRALGLKTDSEIMDRFGDDPRIVVTLEKDACKTYEDAMLEIYRKL
RPGEPPTLDSAETLMQNLFFDPRRYDLSIVGRYKFNKKLTLWTLAKGQQLAMPVADPATG
EILFDEGHVLTGAECRELDAIGVAEVSVKLDSGDVIRVFTNRMCDMSRYVDFDPKECCGI
KERVRFDVLQELLGQYSGEELMEQCRLHADDLVPKHIIVDDILASINYMNALAHGLVNKD
DIDHLGNRRLRCVGELLQNQFRIGFSRMERVIRERMTIQDLDIVTPQSLINIRPVTAAIK
EFFGSSPLSQFMDQTNPLAELTHKRRLSALGPGGLSRERANMEVRDVHYSHYGRMCPIET
PEGPNIGLISYLATYARVNEYGFIEAPFRRVEHPSGRVTDEITYMTADVEDQYIVCQAAE
PVDENGCLIGPRITCRHQDETIQVEPEYVDYMDISPRMMVSIATAMIPFLPNDDANRALM
GANMQRQAVPLLRPEAPIVGTGMEHKICLDSAVAVLAEGDGIVTKVDATNVSVKYDAGET
KDYKLIKFLRSNHGTCINQKPIVSVGERVHGGDDPTVLADGPATQEGEIALGRNILVGFM
TWEGYNYEDAVLLNERLVKEDVYTSIHIEEYEIDARDTKLGPEEITRDIPNVGEDALKDL
DERGIIRVGAEVHAGDILVGKVTPKGETDLTAEERLLRAIFGEKAREVRDTSLKVPHGES
GIIVDAKVFTRENGDELGPGVNQVVRVYIAQRRKIQVGDKMAGRHGNKGVVSRVLPQEDM
PFLPDGTPLDIVLNPLGVPSRMNIGQVLEVHLGYAAKTLGWKVATPIFDGATDKDISEAL
QLAGLDPEGKSWLYDGRTGERFDNKVTVGYVYFLKLHHLVDDKIHARSTGPYSLVTQQPL
GGKAQFGGQRFGEMEVWALEAYGASYTLQEILTVKSDDVTGRVRTYEAIVKGHNVPTPGV
PESFKVLVKELQSLCLDIQVLDEDGNQIELKEDEDALDTFNLARMDADDERQNRYADDNE
LADAGFDYVADEEVDASYDGDGEEF
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atggccaaggacaagtactatggcaagaccctgcgaaagaattttgccagacacgaggaa
gtcatggcgatgcccgacctgctggagatccagaagaaatcctacaagtggtttctggac
accggcctgcgggaggtgtttgcggacgtagcctccatcacggactatgccggtaatctg
gagctgagctttatcgattacagcatggacgagaagcccaagtatgacgtggaggagtgc
aaggcccgtgacgccacgtatgccgcccccatgaaggtcagcgtgcggctgcggaacaag
gagacgggcgaaatcaaggagcaggagatcttcatgggtgatttccccctgatgacccac
tccggcacctttgtcatcaacggcgccgagcgtgtggtggtcagccagatcgtccgctcc
cccggcatctactacggcaaggagatcgacctcaagaccgatctgcccctgctgacctcc
accgtcattccctaccgtggcgcatggctggagtacgagaccgacaccagcgaggtgttc
tgggtccgcatcgataagaaccggaagctgcccatcacctgcctgatccgtgcgctgggc
ctcaagactgacagcgagatcatggaccgcttcggtgacgatccccgcatcgtggtgact
ctggagaaggacgcctgcaagacgtatgaggacgccatgctggagatctaccgcaagctg
cgtcccggcgagccccccacgctggactccgccgagaccctgatgcagaacctgttcttc
gatccccggcggtacgatctgagcatcgtgggccggtataaattcaataagaagctgacc
ctgtggacgctggccaagggccagcagctggctatgcctgtggccgatcccgccaccggc
gagatcctcttcgacgagggccacgtcctcaccggcgcagagtgccgggagctggacgcc
atcggcgtggcggaggtctccgtgaagctggacagcggcgatgtgatccgggtgttcacc
aaccggatgtgcgacatgagccgctacgtggatttcgatcccaaggagtgctgcggcatc
aaggagcgggtgcgcttcgacgtgctgcaggagctgctgggccagtacagcggcgaggag
ctgatggagcagtgcaggctccacgccgacgatctggtgcccaagcacatcatcgtggac
gacattctggcctccatcaactatatgaacgctctggcccacggactggtcaacaaggat
gatatcgaccatctgggcaaccgccgcctgcgctgcgtgggcgagctgctgcaaaaccag
ttccgcatcggctttagccgcatggagcgtgtcatccgggagcgcatgaccattcaggat
ctggatatcgtcacgccccagagcctcatcaacatccggcccgttacggcggccatcaag
gagttcttcggctccagccccctgagccagttcatggatcagaccaaccccttggcggag
ctgacccacaagcggcgtctgtccgctctgggccccggcggcctgtcccgtgagcgtgcc
aacatggaggtccgtgacgtgcattacagccactatggccgtatgtgccccatcgagacg
cctgaaggccccaacatcggcctgatctcctatctggccacctatgcacgggtcaacgag
tacggttttatcgaggcccccttccgccgggtagagcatccctccggccgtgtcaccgac
gagatcacctatatgaccgccgacgtggaggatcagtacatcgtctgccaggccgccgag
ccggtggacgagaacggctgcctcatcgggccccgtatcacctgccgccatcaggacgag
accattcaggtggagccggagtacgtggactatatggacatctccccccgtatgatggtg
tccatcgctacggccatgatccccttcctgcccaacgacgacgccaaccgtgcgctgatg
ggtgccaatatgcagcggcaggccgtgcctctgctgcggccggaggcccccatcgtgggc
accggtatggagcacaagatctgcctggactccgctgtggcggtgctggccgagggcgac
ggtatcgtcaccaaggtggacgctaccaacgtgtccgtcaagtatgacgccggcgagacc
aaggactataagctcatcaagttcctgcgctccaaccacggcacctgcatcaaccagaag
cccatcgtttccgtgggcgagcgggtccacggcggcgacgatcccacggtgctggctgac
ggccctgccacgcaggagggcgagatcgctctgggccgcaacattctggtgggcttcatg
acgtgggaaggctacaactacgaggacgccgtgctgctcaacgagcggctggtgaaggag
gatgtgtatacctccattcatatcgaggaatatgagatcgacgcccgtgacaccaagctg
gggcctgaggagatcacccgtgacatccccaacgtgggcgaggatgctctgaaggatctg
gacgagcggggcatcatccgggtgggcgccgaggtccacgccggggacattctggtgggt
aaggtcacccccaagggtgagaccgacctcaccgctgaggagcgcctgctgcgggccatc
ttcggtgagaaggcccgtgaggtgcgtgatacctccctgaaggtgcctcacggcgagagc
ggcatcatcgtggatgccaaggtatttacccgtgaaaacggcgacgagctggggccgggc
gtgaatcaggtggtccgtgtctacatcgctcagcgccgcaagatccaggtgggcgacaag
atggccggccgtcacggcaacaagggcgtcgtgtcccgtgtgctgcctcaggaggatatg
cccttcctgcccgacggcacgccgctggatatcgtgctgaatcctctgggcgttccctcc
cgtatgaacatcggtcaggtgctggaggtccatctgggctatgccgccaagacgctgggc
tggaaggtggccacccccattttcgacggcgccaccgataaggatatttccgaggccctg
cagctggcgggtctggacccggagggcaagagctggctgtacgacggccgcaccggcgag
cgctttgacaacaaggtcacggtgggctatgtgtacttcctgaagctgcaccatctggtg
gatgataagatccacgcccgttccaccggcccctactctctggtgacccagcagcccctg
ggcggcaaggcccagttcggcggccagcgcttcggtgagatggaggtgtgggcgctggag
gcctacggcgccagctacaccctgcaggagatcctcaccgtcaagtccgacgatgtgacg
ggccgtgtccggacctatgaggccatcgtcaagggccacaacgtgccgacccccggcgtg
ccggagtccttcaaggtgctggtgaaggagctgcagtccctgtgcctggatattcaggtg
ctggacgaggacggcaaccagatcgagctgaaggaggacgaggacgctctggataccttc
aatctggcccggatggatgccgacgacgagcgccagaaccgctatgccgacgacaacgag
ctggcggatgcgggctttgactacgtggccgacgaggaagtggacgcttcctacgacggc
gacggggaagaattttaa
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integrated database retrieval system
