Vagococcus carniphilus: H9L18_01765
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Entry
H9L18_01765 CDS
T06797
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vcp
Vagococcus carniphilus
Pathway
vcp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9L18_01765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcp03019
]
H9L18_01765
03009 Ribosome biogenesis [BR:
vcp03009
]
H9L18_01765
Enzymes [BR:
vcp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H9L18_01765
Messenger RNA biogenesis [BR:
vcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H9L18_01765
Ribosome biogenesis [BR:
vcp03009
]
Prokaryotic type
rRNA helicases
H9L18_01765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_22
ERCC3_RAD25_C
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QNN73347
LinkDB
All DBs
Position
340590..342146
Genome browser
AA seq
518 aa
AA seq
DB search
MKFSELKLDKQLLKAIETIGFEEATPIQSATIPLALEGKDVIGQAQTGTGKTAAFGLPML
EKIDTEKAVLQGLVIAPTRELAIQTQEEIYRLGKDKKIKVQAVYGGADIGRQIRSLKNKP
HIVVGTPGRMLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEAIISKVPEERQTLLF
SATMPDSIKRIGVKFMKEPEHVKIKAKEMTANLIDQYFVRCKEFEKFDIMTRLFDVQNPD
LTIVFGRTKRRVDELARGLEMRGYKAEGIHGDLPQHKRMSILKAFKNDEIDILVATDVAA
RGLDISGVSHVYNYDIPQDPESYVHRIGRTGRAGKEGMSVTFVTPNEMSYLHVIEDLTKK
KMTPLRPPSKKEAIEGQIGSAVAQIKDLMVENGLESYQDAASDLLESYSAEDLAALLIKQ
IAKDDASEVPVNITPERPLPSRKGRGGGGRGGNNRGGRGNYRGNNNRGGNRDNNRKKEQY
NKKKRTDNSKPGENRKRSNNNNANKDKSRGFVIRNNAK
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttagtgaattaaaattagacaaacagttattaaaggccattgaaactattggt
tttgaggaagcgacacctattcaaagtgcaacgataccattggcattagaaggcaaagat
gttattggacaagctcaaacaggaactggtaaaacagcggcgtttggattaccaatgctt
gaaaagatagatacagaaaaagctgtgttacaaggtttagttattgctcccacaagagaa
ttagctatccaaacacaagaagaaatttatcgtttaggtaaagataaaaaaattaaagtt
caagccgtttacggtggagctgacattggtcgtcaaatccgctcattgaaaaataaacca
catattgttgtgggaacaccaggtagaatgcttgatcacattaaccgtcgcacattaaaa
ttagaaacagttgaaactttagttttagatgaagcagacgaaatgttaaacatgggattc
ttagaagatattgaagcaattatctctaaagtgcctgaagaaagacaaactttattattc
tcagcaacaatgccagatagtattaaacgcattggtgttaagtttatgaaagaacctgaa
cacgttaaaatcaaagcaaaagaaatgacagcaaacttaattgatcaatattttgttcgt
tgtaaagaatttgaaaaatttgatattatgacacgtttatttgacgttcaaaacccagat
ttaacaatcgtatttggccgtacaaaacgtcgtgtagatgaattagctcgtggattagaa
atgcgtggttataaagcagaaggaatccatggtgatttaccacaacataaacgtatgagc
atcttaaaagcatttaaaaatgatgaaattgatattttagtagcgacagatgtggctgca
cgtggattagatatttcaggtgtatcacatgtttacaactacgatatccctcaagatcca
gaaagctacgttcaccgtattggtcgtactggtcgtgctggtaaagaaggtatgtcagta
acattcgttacaccaaacgaaatgagctacttacatgttattgaagatttaactaagaaa
aaaatgacaccacttcgtccaccttctaaaaaagaagcgattgaaggacaaattggttca
gctgttgctcaaattaaagatttaatggttgaaaacggcttagagtcttatcaagatgca
gcaagtgatttgttagaaagttattcagcagaagatttagctgctttattaattaaacaa
attgctaaagatgatgcatcagaagtaccagttaatatcacaccagaacgcccattacca
tctcgtaaaggtcgtggtggcggtggtcgcggaggaaacaaccgtggtggccgtggaaat
taccgtggtaacaacaaccgtggtggtaaccgtgataacaaccgtaaaaaagaacaatac
aacaagaaaaaacgtacagataacagcaaaccaggtgaaaatcgtaagcgtagtaacaat
aacaacgctaataaagataaatctcgtggatttgttatccgtaacaacgctaaatag
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