Vagococcus carniphilus: H9L18_02145
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Entry
H9L18_02145 CDS
T06797
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K20375
HTH-type transcriptional regulator, pheromone-responsive regulator
Organism
vcp
Vagococcus carniphilus
Pathway
vcp02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vcp00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
H9L18_02145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vcp03000
]
H9L18_02145
Transcription factors [BR:
vcp03000
]
Prokaryotic type
Helix-turn-helix
Other families
H9L18_02145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rgg_C
HTH_3
HTH_19
Calycin_like
HTH_26
DUF3862
Motif
Other DBs
NCBI-ProteinID:
QNN73420
LinkDB
All DBs
Position
complement(414996..415859)
Genome browser
AA seq
287 aa
AA seq
DB search
MIDDGQIFKTIRKSRNISQNEISKGELSRTTISKFENNKVTLSATNFHFLLDSLDISVEE
FNYIKNDYSYKRKEEIIVLFNQLFSNADNYNIEKLIVLCEEYLKENYSKSVQCILNTLFA
LKHLNISENKLNCHSKIYVADVWNILSDIDSWTLLDLKIINCCLYFFEPNTYIHISDQVI
KTLDKYKNFTNIIVLEISIYLNLTMLFLLENNLEYAKKFVKIALKKAYKSKRIDYIATAS
IRYGIIFNNESEIEKGLNLLNILDDDNLSIPIKKEIKLFKNNDLSHP
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgatagatgatggtcaaattttcaaaacaattaggaaatcacgtaacatttctcaaaat
gaaatatctaaaggagagctttcaagaacaactatttcaaaatttgaaaataataaggta
actttgtcagccactaattttcattttttactagactctttagatatatcagtagaagaa
tttaactacataaaaaatgattattcatacaaaagaaaagaagagatcatcgtactgttt
aatcaacttttttcaaatgctgataattacaatattgaaaaattaattgtgttatgtgaa
gaatatctaaaagaaaattatagtaaatcagtacaatgtattttgaacactttatttgca
ttaaaacatttgaacataagtgaaaataaattaaattgccattcaaaaatatatgtagca
gatgtgtggaatattctatctgatattgattcatggacgttattagatttgaaaatcatt
aattgttgtctctatttttttgaacctaatacatatattcacataagtgatcaagtaata
aaaactttagataaatacaagaattttactaatataattgttttggaaatatctatttat
ttaaatttaacaatgctttttttattagaaaataatttagaatatgctaaaaaatttgtg
aaaatcgctttaaaaaaagcatataaaagtaaacgaatcgattatatagcaactgcttcc
atacgatatggaattatttttaataacgagtctgaaatagaaaaaggactaaatttatta
aatattttagatgatgacaatctctctatacctataaaaaaagaaattaaactatttaaa
aataatgacttgtcacatccttaa
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