Vagococcus carniphilus: H9L18_02675
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Entry
H9L18_02675 CDS
T06797
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
vcp
Vagococcus carniphilus
Pathway
vcp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9L18_02675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcp03019
]
H9L18_02675
Messenger RNA biogenesis [BR:
vcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H9L18_02675
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
GPW_gp25
Motif
Other DBs
NCBI-ProteinID:
QNN73519
LinkDB
All DBs
Position
515219..516892
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AA seq
557 aa
AA seq
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MSQIKIVPLGGVRENGKSIYVVEVEDEIFVLDCGLKYPENEQLGIDMVIPDFSYLLENKD
KIAGIFLSHGHADAIGALPYLLENVSVPVFGTELTTELAKINVREYPNTKDFKEFHVVDE
FTEIDFGHAVVSFFSTTHTIPDSIGISIKTKEGNIVYTGDFKFDQSANKPYQTDFSRLAE
IGKEGVFALLSDSSNAESSSLIASENQTEEEVYDTIRYWEGRIIVASVASNIRRVQQIFN
AAHKSGRQVVLTGKDVEQIVRTAIRLGKLQLPDEDLIITERQMKNKRPEELLILETGRMG
EPLQSLQKMASKRHKSISIQEGDLIYITTTPAISVETTVAKTEDMVYRAGGTVKTISDNL
YVSGHGNENDLKLMLNLMKPKYFVPVQGEYRLLAAHADLAHEVGMSYQDIFITGRGDILE
FEKGRLRMTGSTDADNVLIDGLGVGDIGNIVLRDRKILSEDGIFIAVITINRRAKKIISK
PRITSRGFVYVKTSTDLMKESATIVETVVLENLEKADFDWGVLKQEIRDQLSRYLYEQTK
RRPVILPVIMESSQKRK
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
gtgagtcaaataaaaatagttcctttaggtggcgttagagaaaatgggaaaagtatctac
gttgtcgaagttgaggatgagatttttgttctggattgtgggcttaaatacccagaaaac
gaacaactaggaatcgatatggtcattccagatttttcttatttattagaaaataaagat
aaaattgcaggtatcttcttaagtcatggtcatgcggatgctattggtgcgttaccttat
cttttagaaaatgtttctgttcctgtttttggaacggagttaacgacagagttagcgaaa
ataaatgttcgtgagtacccaaatacgaaagattttaaagagtttcatgtggtagatgaa
tttacggaaattgactttggtcatgcggttgtgagtttctttagtacaacgcatactatt
ccagattcaataggtatttcaattaaaacaaaagaaggcaacattgtttatacgggggac
tttaagtttgaccaaagtgcgaataaaccgtatcaaacagacttttcaagattagctgaa
attggtaaagaaggcgtctttgctttactaagtgattcaagtaatgcagaaagttcttca
ttgattgcttctgaaaatcaaacagaagaagaagtgtatgatacgattcgctactgggaa
ggtcgtattattgttgcaagtgtagcaagtaatattagacgagttcaacaaatttttaat
gctgctcataaatcaggccgtcaagttgtattgacaggaaaagatgtggaacaaattgtt
cgtacagcaattcgtctaggtaaattacaattaccagatgaggatttaattattacagag
cgtcaaatgaaaaataaacgtccagaagagttgttaatattagaaacaggtcgtatgggc
gaacctttacaatcgttacaaaaaatggcaagtaaacgtcataaatcaattagcattcaa
gaaggtgatttaatttatatcacaacgacaccagcaatttctgttgaaacaacagttgct
aaaacagaagacatggtttatcgtgctggtggaacagtgaagacgatttctgataactta
tatgtatcaggtcatggaaatgaaaatgatttgaagttgatgttgaacttgatgaaacct
aaatattttgttccagttcaaggtgagtatcgtttgttagctgctcatgccgatttagct
cacgaggtaggaatgtcttaccaagatattttcatcactggtcgtggtgatattctagaa
tttgaaaaaggtcgtttgagaatgactggttcaacagatgctgataatgttttaattgat
ggtttaggtgtaggagatattggtaatatcgttttaagagatagaaaaattttatctgaa
gatggtatatttattgctgttatcaccattaatcgccgcgctaaaaaaattatttcaaaa
ccaagaattacatctcgaggttttgtctatgttaaaacaagcactgatttgatgaaggaa
agtgcaaccatcgtagaaacagttgttttggaaaatctagaaaaagctgattttgattgg
ggcgttttaaaacaagagattagagatcaattgagtcgctatctatatgaacaaactaag
agaagaccggttatcttacctgtgattatggaatcaagtcaaaagagaaaataa
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