Vagococcus carniphilus: H9L18_03570
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Entry
H9L18_03570 CDS
T06797
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
vcp
Vagococcus carniphilus
Pathway
vcp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9L18_03570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcp03019
]
H9L18_03570
Messenger RNA biogenesis [BR:
vcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H9L18_03570
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
QNN73686
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All DBs
Position
complement(699772..701445)
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AA seq
557 aa
AA seq
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MKVQIKNNETGVFGIGGLGEIGKNMYGVQFQDEIIIIDAGIKFPEDDLLGIDYVIPDYQY
ILKNLSKVKALVITHGHEDHIGGVPFLLKQANIPIYAGPLAMALIRNKLDEHGLLRDAEL
HEVNEDSVIKFRKTSVSFYRTTHSIPEANGVIVKTPSGNIVYSGDFKFDFTPVGEPADLH
KMARLGEEGVLCLLSDSTNAEVPDFTKSEKVIGDSILRIIEKVEGRVIFATFASNIFRLQ
QTAEAAVKTGRKIAVFGRSMENAMVNGRALGYINVPDDTFIDSREINNYPANEIMILCTG
SQGEPMAALSRIANGTHRQIAIQPDDTVIFSSSPIPGNTTSVNRLINLLSEAGANVIHGK
VNNIHTSGHGGQQEQKLLLRLLKPKYFIPVHGEYRMLNVHSQSAQATGVKKENCYILENG
DVLALTAESARKAGHFNADDVYVDGSGIGDIGNIVLKDRRILSEDGLVLAVATVNYETQT
IVAGPDILSRGFIYMRESGELIQESQRILFNAIRKALKNKDCDEAMLNEVIINAIQPFLI
EQTERHPMILPVVLEAN
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgaaagttcaaataaaaaacaatgaaacaggtgtatttggcatcggtggacttggtgaa
attgggaaaaatatgtatggggtccaatttcaagatgaaatcatcatcattgatgctggt
atcaaattcccagaagacgatttattaggaattgattatgttattcctgactatcaatac
atccttaaaaatctttctaaagtgaaagctttagtaattacccatggacacgaagatcat
attggtggcgttccatttctattaaaacaagctaatattccgatttatgcaggccctctt
gctatggctcttattcgtaacaaactagacgaacatggtttacttcgtgatgctgaatta
catgaagtcaacgaggattctgttattaaattcagaaaaacatcagtaagtttttatcgc
acaactcatagtattccagaagcaaacggtgtaattgttaaaacaccttctggtaatatt
gtttattctggtgactttaaatttgattttactcctgtcggtgagcctgctgatttacat
aaaatggctcgacttggagaagaaggcgttctttgtttattatcagatagcacgaatgct
gaagtgcctgattttaccaaatctgaaaaagttattggcgattcaattttaagaattatt
gaaaaagttgaaggccgtgtcatatttgctacatttgcttcaaatattttcagattacaa
caaacagcagaagctgctgttaaaactggtcgtaaaattgctgttttcggtcgtagtatg
gaaaacgcaatggttaatggtcgtgcattaggttacatcaatgtaccagacgatacgttt
attgatagtcgagaaatcaataattatccagctaatgaaatcatgattttatgtacgggt
tctcagggtgaaccaatggctgccttaagtcgtattgctaatggaactcaccgccaaatt
gcaattcagcctgatgatacagttattttttcaagctctccaattcctggaaacacaaca
agtgttaatcgcttgattaacttactttcagaagctggtgctaacgtgattcatggtaaa
gttaataatattcatacttctggtcacggcggccaacaagaacaaaaattattacttcgc
ttacttaaaccaaaatattttatccctgttcacggtgaatacagaatgttaaatgtacat
tcacaatctgctcaagcaacaggcgttaaaaaagaaaactgctatatcttagaaaatgga
gatgtcttagctttaactgctgaaagtgctagaaaagctggtcattttaatgcagatgat
gtttatgtagatggtagcggtattggtgatattggcaacatcgtcttaaaagatcgtcgt
attctttctgaagatggtttggttttagctgttgcaacagttaactatgaaactcaaaca
attgtggctggtccagacatcttatctcgtggatttatctatatgagagaatccggagaa
cttatccaagaatcacaacgaattttatttaatgccattcgtaaagctttgaaaaacaaa
gattgtgatgaagctatgttaaatgaagttattattaacgccatccaacctttcttaatc
gaacaaactgaaagacatccaatgattcttccagttgttcttgaagctaactag
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