Vagococcus carniphilus: H9L18_06855
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Entry
H9L18_06855 CDS
T06797
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
vcp
Vagococcus carniphilus
Pathway
vcp03030
DNA replication
vcp03430
Mismatch repair
vcp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H9L18_06855 (holA)
03430 Mismatch repair
H9L18_06855 (holA)
03440 Homologous recombination
H9L18_06855 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcp03032
]
H9L18_06855 (holA)
03400 DNA repair and recombination proteins [BR:
vcp03400
]
H9L18_06855 (holA)
Enzymes [BR:
vcp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
H9L18_06855 (holA)
DNA replication proteins [BR:
vcp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
H9L18_06855 (holA)
DNA repair and recombination proteins [BR:
vcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
H9L18_06855 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_delta
DNA_pol3_gamma3
AAA_assoc_2
Motif
Other DBs
NCBI-ProteinID:
QNN74295
LinkDB
All DBs
Position
1384377..1385393
Genome browser
AA seq
338 aa
AA seq
DB search
MSLQDELVKIKKQQFKPIYTVIGTETFLIETFKKQLKSSISSEAEDEFNIITFDMTEVEL
SSVIYEAETVPFFGDYKVIFVENPYFLTGEKKKNELNHDLSLLLAYLENPLSTSIIVFVA
SYEKLDERKKVVKLLKKESQLVDVSKMTDKTLIPYVKQHIENEGYSIDKQAFERLTYLTD
MDLTRIMNELEKLFLLTLSSKSITKNDVESLIPKSLEHNIFDLNQYVIGNRTDEALNLYH
DLLVSGEETIKIISILLGQIRLLLQVKILLDMNYQQSNITDTLKIHPYRVKLAVQQCKSL
SFKQLGEMFDELIEMDFNIKTGKIEKELAFELFLLKKR
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttacaagatgaactagtaaaaataaagaaacaacagtttaagcctatctatact
gtgataggaacagaaactttcttaattgaaacttttaaaaagcaattgaaaagctcgata
tcaagtgaagctgaagatgaatttaatattattacttttgatatgacagaggtagaatta
tcatcagttatttatgaagctgagacagttcctttttttggggattataaagttattttt
gttgaaaatccttattttttaacaggagaaaaaaagaaaaatgaattaaatcatgattta
tctttattactagcttatttggagaatccattatcaacaagcataatagtctttgttgct
agctacgaaaaattggatgaacgaaaaaaagtggttaagttgttgaagaaggaaagtcag
cttgttgatgttagcaaaatgacggataaaacactgattccttatgtgaaacagcacata
gaaaatgaaggttattctattgataaacaagcttttgaaagattaacttatttaacagat
atggatttaacaagaattatgaatgagttagagaaactcttcttattaactctatcatca
aagagtattactaaaaacgatgttgaatcattaattcctaaatctttagaacataatatt
tttgatttaaatcaatatgttattggtaataggacagatgaagctcttaatctatatcat
gatttattagtgagtggagaagagaccattaaaataatatcaatacttttaggccaaatt
aggttgttattacaagtcaaaatattgctagatatgaattaccagcaaagtaatattact
gatacactgaaaattcatccataccgtgttaaattagcggttcagcaatgtaagagtcta
tcctttaaacaattaggtgagatgtttgatgaattaattgaaatggattttaatattaaa
accggaaaaatcgaaaaagaacttgctttcgagttattcttattgaaaaaaagataa
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