Vagococcus carniphilus: H9L18_07385
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Entry
H9L18_07385 CDS
T06797
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
vcp
Vagococcus carniphilus
Brite
KEGG Orthology (KO) [BR:
vcp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcp03019
]
H9L18_07385
03009 Ribosome biogenesis [BR:
vcp03009
]
H9L18_07385
Enzymes [BR:
vcp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H9L18_07385
Messenger RNA biogenesis [BR:
vcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H9L18_07385
Ribosome biogenesis [BR:
vcp03009
]
Prokaryotic type
rRNA helicases
H9L18_07385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Kinesin
Microtub_bd
PRAI
AAA_22
DUF1798
Motif
Other DBs
NCBI-ProteinID:
QNN74394
LinkDB
All DBs
Position
1496377..1497723
Genome browser
AA seq
448 aa
AA seq
DB search
MNLFKQFNFEPFLMEALEEKHFLKPTEVQERLIPVIMGGKNVVGQSQTGSGKTHTFLLPM
MNAVETDKDEVQGIITTPSRELAEQIYQAAIQLAKHSPNEIRVSQFVGGTDKKRQMEKLK
SSQPHIVIGTPGRILDLVNSQSLKTFTAKYFVVDEADMTLDMGFLEDVDKIAATLPKELQ
MLVFSATIPVKLKPFLKKYMDNPVVEHIKPTSVISDTIDNWVISTKGQNVNAIIYQLLTV
GHPYLVMVFANTKQRVDEISTYLKEQGLKVATVHGDIPPRERKRVMKNIQNLDYQYVVAT
DLAARGIDIEGVSHVINAEIPADLEFFIHRVGRTGRNGLDGTAITLYQPQDESQLAELEK
LGIEFHPKAIRGGEIVNSYDRNRRAKRDKSQRQLDTEMIGLVKKKKKNIKPGYKKKINRA
IDDKAKKERKIERRQTDRAKRKSRKQDY
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgaatttattcaagcaatttaattttgaaccatttttaatggaagctttagaagaaaaa
catttccttaaaccaacagaagtacaagaaagattaataccagttattatgggtggcaag
aatgttgtaggacagtcacaaactggatcaggaaaaacacatacatttttactaccaatg
atgaatgctgttgaaacagacaaagatgaagtacaaggtattatcacaacaccaagtcgt
gaattagctgagcaaatttatcaagcagccattcaattagcaaaacactctccaaatgaa
attagagtttctcaatttgttggaggaactgataagaaaagacaaatggaaaaactaaaa
tccagccaaccacatattgttattggaacaccaggtagaattctagatttagttaatagt
caatcattgaaaacttttaccgctaaatattttgttgttgatgaagctgatatgacgtta
gatatgggatttttagaagatgttgacaaaattgcagcgactcttcctaaagaattacaa
atgttagttttctcggcaacaattccagttaaattaaaaccatttttaaaaaaatacatg
gataatcctgttgttgaacatatcaaaccaacatcagttatctcagatacaattgataac
tgggtgatttcaactaaaggtcaaaatgtgaatgcgattatttatcaattactaacagtt
ggtcatccttaccttgtaatggtatttgcgaatactaaacaaagagtggatgaaatttca
acttatctaaaagagcaaggattgaaagttgctactgttcatggggatattccaccacgt
gaaagaaaacgtgtcatgaaaaatatccaaaatttagattaccaatatgttgtagcaact
gatttagctgctcgtggtattgatattgagggggtttcgcatgttattaatgctgaaatt
ccagctgatttagagttcttcattcaccgtgtcggaagaactggtcgtaatggattagac
ggaacagctattacgttatatcaacctcaagatgagtcacagttagctgaacttgaaaaa
ttagggattgaattccatcctaaagcaatccgtggtggtgaaattgttaattcttatgac
cgaaatcgtcgtgctaaacgagataagagtcaacgtcaacttgatactgagatgattggt
ttagtgaagaaaaagaaaaaaaatattaaaccaggatataagaaaaaaatcaatcgtgct
attgacgataaagctaaaaaagaacgtaagattgaacgtcgtcagacagatcgcgcgaaa
cgtaagtcaagaaaacaagattattag
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