Vagococcus carniphilus: H9L18_10120
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Entry
H9L18_10120 CDS
T06797
Symbol
addA
Name
(GenBank) helicase-exonuclease AddAB subunit AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
vcp
Vagococcus carniphilus
Brite
KEGG Orthology (KO) [BR:
vcp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcp03400
]
H9L18_10120 (addA)
Enzymes [BR:
vcp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H9L18_10120 (addA)
DNA repair and recombination proteins [BR:
vcp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
H9L18_10120 (addA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DEAD
AAA_30
ResIII
AAA_12
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
QNN72211
LinkDB
All DBs
Position
complement(2046316..2050077)
Genome browser
AA seq
1253 aa
AA seq
DB search
MTNEVVIPLKPENSHFTDKQWQAVYDGGSNLLISASAGSGKTTVLVERVIQKIKSGVNVD
ELLIVTYTEAAAKEMKQRIQVAVQTAINEETDIDSRQHLIRQLSLLPTASISTLHAFCLT
VIRKYYYLIHIDPVFRLLTDETEIALLKEDVWEEVREELYGENKEKFYQLTENFSNDRND
NGLTNLIFSLCNFAKSNTDPDKWLDSLPAIYEVENSIGESPLYQNLMKPNLVKEFLQIKE
QCESLIRQIKGEPDFEKTVGVLESDLLFIQTLSNQVNSDDLTGCYESLLSTKFAVIKGPS
KKTSPEEVMAFYEEIKNERDMIKKRVATIKKNYFSLSPEKMLELMKQTKPLVEEMVSVCK
IYLESFRKEKEKKNLVDFNDLEHFTLAILRQLESDEWVASEASIYYRNKFKEVLVDEYQD
VNRLQEGILYWLRKVDQENGNLFMVGDVKQSIYAFRLADPTLFIEKYEQYATNDDGRRII
LAENFRSRGSVLDFTNLIFTQLMDRELGQIEYDKSAELITGFKGYPETKSHDTEILIFES
ESEEEEIENLDLTFTIDDKTEGELLIVGKKIKEMIDNKFPIFDKKKKETRPIKYQDIVLL
SPTKKNNLVILDVFKELDIPLYINDTQNYFQATEVKIMVALLQIIDNPYQDIPLAAVLRS
PIVGIKENDMVKIRQFSQTGYYYDALRQYLREETNRSELYQKIEEFNQLLTGWRELARRE
KLVTLIWRIYQETGLLDYVGGMPSGKQRQANLHALYERATAYEEMNFKGLFQFIRFIEKM
QAKDKDLAEPNDLSDSEDAVRVMTIHASKGLEFPVVFVLDMSKQFNMTDINQQSFIFDES
LGAGIKYFDSENRIKYETLPYVVIREQKRRKLLAEEMRKLYVALTRAEEKLFLVGSYKNQ
EDALKKWQQNLTSDHLILSTSGRLAQRSLMGWVGMSLVRHPETLKAFPSITLDPVKGLGS
LPGDFSIQFFTKDDVILKQGATELEKITNHLENDGPDPQFLKQVVDRLNYQYSDLSATVT
TSYQSVSEIKRVFEDPDNKELQVLDFSKPMTLSGNRIVGEELAKPAFLSKMKGATPAEIG
TATHLVMQMLDLSKQPTSGNLDELINTLIQTKVLEENIAQKIDQELILKFFNTSFGQQLL
KENNHIKREQPFSLLLEAKQIFSNFEGKETDKLLVHGIIDGFIETEDELILYDFKTDYVP
KKATEADIESIKKKYVGQLNLYRQALEQIKQRKVTSVKLVLLKGDKQIEMLDN
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atgacgaatgaagtagtaattcctttgaaacctgaaaatagccatttcactgataagcag
tggcaagctgtttatgatggtggtagtaatttattaatttctgcttcagcaggttctggt
aaaaccactgttttagtagagcgagttattcaaaaaataaaaagtggtgtaaatgtagat
gaattgctgattgtaacgtatacagaagcagcggcaaaagagatgaagcaaagaatacaa
gtagctgtgcaaacagctattaatgaagaaacagatattgatagcagacaacatttgatt
cgacaattgagtttacttccgacagcttcaattagtaccttacatgctttttgtttaacg
gttattagaaaatattattatttgattcatattgatccagtttttagattgttgacagat
gaaacagaaatagccttactgaaagaagacgtgtgggaagaggtacgagaagaattatat
ggtgagaacaaagaaaaattctatcaattaacagaaaatttttcaaatgatcgaaatgat
aatggattaactaatctaatcttttctttatgtaattttgctaaatcaaatacggaccca
gataaatggttagatagcttaccggctatttacgaagttgaaaatagcattggcgaaagc
ccactatatcaaaatttaatgaaacctaatttagtaaaagagtttcttcaaatcaaagag
caatgtgaatctttaattcggcaaatcaaaggagagcctgattttgaaaaaaccgttggg
gttctagaatcagatttattgtttatccagacgttaagtaatcaagtaaattcagatgat
ttaacaggatgctatgagtctttactatctactaaatttgctgttattaaaggaccaagt
aaaaaaacaagcccagaagaagtgatggctttctatgaagagataaaaaatgaacgagat
atgattaagaaaagggtagcgactattaaaaagaactatttcagcttgtcacctgagaaa
atgttagagttgatgaagcaaacgaaaccacttgtcgaagagatggtttctgtttgtaaa
atttacttagaaagctttcgtaaggaaaaagaaaagaagaatttagtcgattttaacgat
ttagaacattttactttagctattttaagacagctagaatcagatgagtgggtagcttca
gaagcatctatctattatcgtaataaatttaaggaagttttggttgatgaataccaagat
gttaataggttgcaagaaggtattctttactggttaagaaaagttgaccaagagaatggt
aatttatttatggttggtgatgtgaaacaatctatttatgcgtttcgtttggcagatcct
actctttttattgaaaagtatgaacaatacgcaactaatgatgatggacgtagaattatt
ttagcagaaaactttcgctctagaggtagtgttttagattttactaatcttatcttcact
caattaatggatagagaattaggccaaattgaatacgataaaagtgctgagttaattaca
ggatttaagggatatccagaaactaagtctcatgatacagaaattttaatttttgagagt
gaatctgaagaagaggaaattgaaaacttagatttaacgtttacaattgatgataaaaca
gaaggtgaattattaattgttggaaaaaaaatcaaagaaatgattgataataagtttcct
atttttgataaaaagaaaaaagagactcgacctattaaatatcaagatattgttttatta
agcccaacgaaaaaaaataatttagttattctagatgtttttaaagaattagatattcct
ctttatattaatgatactcaaaattattttcaagcaactgaagtaaagataatggttgct
ttgcttcaaattattgacaatccttatcaagatattccacttgcagcagttcttcgctcg
ccgattgttggaattaaagaaaatgatatggtaaagatcagacaattttctcaaacgggt
tactattatgatgcattaagacaatatttaagagaagaaacgaatcgctcagaattatat
caaaaaattgaagagtttaaccaattactaactggttggcgagaactagctagacgagaa
aaattagttactttaatttggcgaatataccaagagacaggtttactggattatgtaggc
ggcatgccttctggaaaacagagacaagctaatcttcatgccttatatgaacgagcaact
gcttatgaagagatgaactttaaagggttgtttcagttcattcgttttattgaaaaaatg
caagctaaagataaagatttagcagaaccaaatgacttgagtgactctgaagatgcagta
cgagtgatgactattcatgcgagtaaagggcttgaatttccagtagtctttgttctggat
atgagcaaacagtttaatatgacagatatcaatcaacaatcgtttatttttgatgaaagt
ttaggtgcaggaattaaatattttgattcggaaaacaggattaaatatgagacattacct
tatgtggtgattagggaacaaaaaaggcgtaaattacttgcagaagaaatgagaaagtta
tatgtagcattaacaagagcggaagaaaaactctttttagttggctcttataaaaatcaa
gaagatgctttgaaaaaatggcaacaaaatctgacatcggatcacttgattctttcaaca
agtggtagactggctcagagaagtttaatgggatgggttggtatgagtttagtcagacac
cctgaaacactcaaggcttttcctagtattactctagatcctgtgaaaggcttagggagt
ttgccgggagattttagtattcaattttttacgaaagacgatgttattttaaaacaagga
gcgacagaacttgaaaaaataactaatcatcttgaaaatgatggacctgatcctcagttt
ctcaaacaagtagttgaccgattaaattatcaatattcagacctttcagcaacagttaca
actagttatcagtctgtatcagaaattaaacgtgtatttgaagatccggataataaagaa
cttcaagttttagatttttcaaaaccaatgacactatctggcaatcgaatagtgggagag
gagttagctaaaccagcatttttaagtaaaatgaagggggcaactcctgctgagattgga
acagctacccatttagtcatgcaaatgttggatttatctaaacaaccaacttcgggaaat
ttagatgaattgataaacacattgatccagacaaaagtattagaggagaatattgctcaa
aaaatcgatcaagaacttattctaaaattctttaacacgtcgtttgggcaacaattatta
aaagaaaataaccacataaaaagagagcaaccattttctttacttcttgaggcaaaacaa
attttttctaattttgaaggaaaagaaacagataaattattagttcatgggatcattgat
ggatttattgaaacggaagatgagttaatactttatgactttaaaactgattatgttcca
aaaaaagcaacagaagcagatattgaatcgattaagaaaaaatatgtcggacagttaaat
ctttatcgtcaagcattagaacagataaaacaaagaaaagtcacttctgtaaagttagtc
cttttaaaaggggataaacaaattgaaatgttagataattaa
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