Vagococcus carniphilus: H9L18_13105
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Entry
H9L18_13105 CDS
T06797
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vcp
Vagococcus carniphilus
Pathway
vcp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9L18_13105 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcp03019
]
H9L18_13105 (pnp)
03016 Transfer RNA biogenesis [BR:
vcp03016
]
H9L18_13105 (pnp)
Enzymes [BR:
vcp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
H9L18_13105 (pnp)
Messenger RNA biogenesis [BR:
vcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
H9L18_13105 (pnp)
Transfer RNA biogenesis [BR:
vcp03016
]
Prokaryotic type
tRNA degradation factors
H9L18_13105 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
KorB
SPATA25
S1_2
Motif
Other DBs
NCBI-ProteinID:
QNN72780
LinkDB
All DBs
Position
complement(2701884..2704016)
Genome browser
AA seq
710 aa
AA seq
DB search
MLSSEKKVFETTWGGRPLSVEIGQLAKQANGAVLVRYGDTVVLTAAVASKQAKDVDFFPL
TVNYDEKMYAVGKVPGGFIKREARPSETATLTARLIDRPIRPMFADGFRNEVQITNVVMS
VEQDCPPQMAAMLGSSLALCVSDIPFNGPIAGVDVGRVNGEYVINPTVEQLEVSDIELTV
AGTKDAINMVESGAKEVSEEDMLGALLFGHAEIKRLVAFQEEIAKEIGKEKMEISLLQID
EDLEKEINEAYKTRMVEAIQTEEKLAREDNIDALKEEIIASYEEKFAEDAELAKWMKEVR
QILENMEKNEVRRLITIDKVRPDGRKIDEIRPLDSEIGLLPRVHGSGLFTRGQTQALTTC
TLAPLGEHQIIDGLGIEESKRFIHHYNFPQFSVGSTGPSRGPGRREIGHGALGERALAQV
IPSEEDFPYMIRLVSEVLESNGSSSQASICGGTLALMHAGVPIKAPVAGIAMGLVMDDDN
YTILTDIQGMEDHLGDMDFKVAGTKAGITALQMDIKIEGITEQILTEALAQAKKARMEIL
ANLTATIAEPNKELSKYAPKIEMIQINPDKIKTVIGKGGETINKIIEETEVKIDIDQEGN
VSIAHSDQERIDRAIEIIKELVREVEVGQVYLAKVVRIEKFGAFVNLFGNKDALVHISQF
AHERVNKVEDVVKMGDEILVKVTEIDKQGRVNASRKAMIEKPKEEKTEEK
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgttaagttctgaaaaaaaagtatttgaaactacttggggcggacgcccgttatcagtt
gaaattggtcaattagctaaacaagctaatggcgctgttttagtgagatatggtgataca
gttgttttaactgcagcagtagcatcaaaacaagcaaaagatgttgactttttcccatta
acagttaactatgacgaaaaaatgtatgcagttggtaaagttcctggtggctttattaaa
cgtgaagcacgtccgagtgaaacagcgacattaacagctcgtttaatcgaccgtccaatt
cgtccaatgtttgcagatggttttagaaatgaagttcaaattactaacgttgtcatgagt
gttgagcaagattgtccacctcaaatggctgctatgttaggttcttcattagcactatgt
gtatctgatattcctttcaatggtccaattgcaggagttgatgttggtcgagttaatggt
gaatacgttattaacccaacagtagagcaattagaagtatcagatatcgaattaactgtt
gctggaacaaaagatgctattaacatggttgaaagtggagcaaaagaagtatcagaagaa
gatatgttaggtgctttactatttggtcatgcagaaatcaaacgtttagtggcgttccaa
gaagaaattgctaaagaaattggcaaagaaaaaatggaaatttcacttttacaaattgat
gaagatttagaaaaagaaatcaatgaagcttataaaactcgtatggttgaagcaattcaa
acagaagaaaaattagctcgtgaagataatatagatgcattaaaagaagaaattatagct
tcttatgaagaaaaatttgcagaagatgcagaacttgctaagtggatgaaagaagttcgt
caaatcttagaaaatatggaaaaaaatgaagttcgtcgtttgattacaatcgataaagtt
cgtcctgatggtcgtaaaattgatgaaatcagacctcttgattctgaaatcggactattg
ccaagagttcacggatcaggtctattcactcgtgggcaaactcaagctttaacaacttgt
acattagcaccacttggagaacatcaaattattgatggtttaggtattgaagaaagtaag
agatttattcaccattataacttcccacaattctcagttggttcaactggaccaagtcgt
ggaccgggtcgtcgtgaaatcggacatggtgctttaggagagagagctttagcgcaagtt
attccaagtgaagaagatttcccatatatgatacgtttagtatcagaagtattggaatca
aatggttcttcttctcaagcaagtatctgtggtggaacattagcacttatgcatgctggt
gtacctattaaagcgccagttgcaggtattgctatgggacttgttatggatgatgataac
tatacaatcttaacagatatccaaggaatggaagaccacctaggtgatatggactttaaa
gtagctggaactaaagcaggtattacagctcttcaaatggatattaaaattgaaggtatt
acagaacaaatcttaacagaagctttagctcaagctaaaaaagctcgtatggaaatttta
gctaacttaacagctacaattgctgaaccaaataaagaattaagtaaatacgctcctaag
attgaaatgattcaaatcaatccagataaaattaaaacagttatcggtaaaggtggagaa
accatcaataagattatcgaagaaactgaagttaaaattgacattgatcaagaaggtaat
gtaagtattgctcattctgatcaagaaagaattgatcgtgcgattgaaatcattaaagaa
ttagtgagagaagttgaagtaggtcaagtttacttagctaaagttgttcgtattgaaaaa
ttcggtgcctttgttaacttattcggtaacaaagatgctttagtacatatttctcaattt
gctcatgaaagagtgaataaagtagaagacgttgttaaaatgggtgacgagatcttagtt
aaagtaactgagattgacaaacaaggtcgtgtgaatgcgtcacgtaaagcaatgattgaa
aaaccaaaagaagaaaaaacagaagaaaaataa
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