Vibrio cholerae O1 2012EL-2176: EN18_05890
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Entry
EN18_05890 CDS
T03389
Name
(GenBank) type IV secretion protein Rhs
Organism
vcq
Vibrio cholerae O1 2012EL-2176
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Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
RHS
OCRE
Neil1-DNA_bind
DUF4585
Motif
Other DBs
NCBI-ProteinID:
AIT32336
LinkDB
All DBs
Position
unnamed:158980..163233
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AA seq
1417 aa
AA seq
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MRSRPSLLLMRNLRSLAVVVLATLPCVAFAQWRVVAVSTEVDKMRFNTIIDAHSFMKNYR
SGEEQGKGTPVGDALYPVASYGDGRYVSRICFKYLGATGDYDPTTCTGDPATVYWRSTYV
LPGEMDKTPFLDRDLGLPTTTMCVGNPIHLGTGNKFQAELDYQSGGSDPFTFTRYYNSHL
PDEELGGWRHTYSRSVEVNASKYGENMVVLHRPEGQQLAFYNSSSVWVPTWKTDDTLTKD
ATGWRYTQSDGVVEAYDETGRLTGIEKPNGNHITLSYLNGELSSITDGFGRTIQFQYQDG
RMVSVTDPAGGSIQYQYNSAGKLAEVIYQDNTSRSYLYDDPNAPGLLSGLVDENGNRFAT
WGYDTQGRAVLSEHAGGAEKTQVSYNADGSVSVTNALGHVQRYTYSRHNGMLKPDVVEGA
PCTGFVGGKETYVYDSKGLVSSITDRAGQKRTFTHNDRGLETTQIDQDGGKVTTDWLPSK
SLPAKITEPTRITELTYDTHLRVISRKVTDRSSGASRTWTYTYAPVGTGKPSLLASVDGP
RTDVSDVTTFDYDDQGNLIRTTNALGQVTQFGDYDANGRAGTIQGVNGVTQTLTYDARGR
LVSSTGPEGTTVYNYDAVGLLSSLTKPNGATVSYEYDAAHRLVAETDAQGNRRELELNDL
GNPVEERLLDALGQTRWIERRIFNEIGWLSSVSDAYSNQSSFSYDVVANLIQETSPSGNT
HSYKYDGFHHRTQTTDPLGKVTQVLYKDTGDVYRVSDPRSRLTYYSYNGFGEVTQVRSPD
TGTTDITYDEAGNVATRKTAKGQTTSYSYDALNRIIETSSDVAGESPILYGYDEATSPYG
IGRLTSVDDGNGVRRFGYTPEGWLAYETWETHGQSLTTQYQYDGAGLVTKITYPSGREVS
YTRDSAGDVIEVTTTQAGTTTNLASQIERAPFGPVTSMVRGNGISESRTLDLDYRVTGID
AARVHSLVYRYTPDSLISAIDDNLSSSVNQSLGYDAVGRITSAEGIYGVLGYGYDATGNR
TSITTDGLSQSYTINYMNNWLVKAGQTSRSYDANGNLTKQGADTFTYDSQNRLVAATVAG
VTVSYTYNHLDQRVTKTLNGHTRLLVYDLAGNLIEELDAATGDVLAEYIWLDGTPLGFVQ
SGQTYQVHVDHLGTPKALTDVSGQVVWKASYSPFGKASIIIQGPTFNLRFPGQYYDAETG
FHYNWRRYYDPATGRYITSDPLGLIDGVNTYGYVHGNPMSNTDPTGEFAFVGAGIGAGLE
LLSQLIENNGSWKCVSWSKVGIAGAIGAIGGGWASGVFRHASSGKSWFKLSQKWSNVSPR
VRKVQGVPRGNELHHWAIQRNGKFGKYVPDSIKNHPWNLKSIPRDIHQNIHGNGPTPYSA
FGRWWHGTPEWAKVAQASPVSGGLADSINDEGCGCAN
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atgagatcgagaccttcccttttactgatgcgaaacctgcggtcattggccgttgtggtg
ctcgcaactttgccatgcgttgcttttgcacaatggcgggttgtagccgtgagcaccgaa
gtagacaaaatgcgcttcaacaccatcatagacgcgcattccttcatgaagaattatcgc
tctggtgaggagcaagggaagggaacgccagttggggatgcgctttatccggttgccagt
tatggtgatggccgttatgtctccaggatctgttttaagtatctaggtgctactggcgat
tatgaccccactacctgcactggcgacccagctacggtctactggcgctcaacctatgtt
ctgccgggtgagatggataaaacaccgttcctggacagggatctcggcttaccaacaacg
accatgtgtgtagggaaccctatccatcttggcaccggcaacaagttccaggctgaactg
gattatcaaagcggaggctccgaccctttcacattcaccagatactacaatagccacctt
cctgatgaagagctcggcggctggcggcatacctactcgcggagcgtcgaggtcaacgcc
tcgaagtacggtgagaacatggttgtcctgcaccggccagaagggcaacaactcgcgttc
tacaactcgtcctctgtctgggtgccaacatggaaaaccgatgataccttgacgaaggat
gctaccggctggcgctacactcaatctgacggggtagtcgaggcctatgatgaaaccgga
cgactgaccggcatcgagaagcccaacggcaatcacatcaccctgagctatctgaacgga
gagctatcctcgatcactgacggctttggccgcaccatccagttccagtatcaagatggc
cgcatggtcagtgtcaccgatcctgctggtggcagtattcagtaccagtacaacagcgct
ggcaagctggcggaagtgatctaccaggacaatacgagccgcagctatctctacgatgac
ccgaatgcaccgggtttgctctctgggctggtggacgagaacggcaaccgtttcgccaca
tggggatatgatactcaggggagagcggttctaagcgaacacgccgggggcgcagagaaa
actcaggtaagctacaacgctgacggaagcgtctctgtcaccaatgccctcggccacgtt
cagcgatacacctacagtcgccacaatgggatgctcaagcctgatgtggttgagggtgcg
ccgtgtaccggctttgtgggcggcaaggaaacctacgtctacgacagcaaaggcctcgtc
tccagcattactgaccgcgctgggcagaagcgcacgttcacccataacgaccggggattg
gaaaccacccagatagaccaggacgggggtaaggttacgaccgactggcttccttccaag
tcgctcccggcaaaaatcacagaaccaaccaggatcactgagctcacctacgacactcat
ctccgggtgataagccgcaaggtcactgatcgcagctcgggcgcttcccggacatggacc
tacacctatgcccctgttggtacaggaaagccgagcctgttggcctcggttgatggtccg
cgcaccgacgtcagcgatgttacgacatttgactacgatgaccagggcaacctgatccgg
acaacgaacgcgctggggcaggtgacgcagtttggtgactacgacgcgaacggtcgcgcc
gggaccattcagggtgtcaatggtgtaacccaaaccctcacctatgacgccagaggaaga
cttgtcagctccactgggccagaaggaaccacggtctacaactatgatgctgtgggcctc
ctgagttcgctgaccaagccaaatggtgcaaccgtcagctatgagtacgacgctgcacat
cggctggtggcggaaacagatgcacagggcaaccggcgcgagcttgagctcaatgacctc
gggaacccagtagaagagcgactgctcgatgcgctgggccagacccgttggatagagcgc
cggatcttcaacgaaatcggctggctctccagtgtctccgacgcctatagcaatcagtca
tcgttttcctacgatgtggtggcaaacctgatacaggagaccagtccctctggtaacaca
cactcctacaagtacgacggcttccatcaccggacacaaacgaccgatcccctcgggaag
gtcacgcaggtgctctacaaggataccggcgatgtttaccgtgtctccgaccctcgttcg
cgcctgacctactacagctacaacggctttggcgaagtgacccaggtccggagcccggac
accggcaccaccgacattacctatgacgaagccggtaacgtggcaacgcgcaaaacggcc
aaggggcaaaccacaagctacagctatgacgcgctgaaccggatcatcgaaacctccagc
gatgtcgctggcgaatcgccaattctgtacgggtacgacgaagcaacctcaccatacggc
ataggccgcttgacctcagtcgatgatggcaacggtgtccggagatttggctacaccccc
gaaggatggctggcttacgaaacctgggaaacccacgggcagagcctgactacccagtac
caatacgatggtgcaggcctcgtcacgaagatcacgtatcccagtggccgtgaggtctcc
tacacccgtgactcagccggtgacgtcatcgaggtgacaacgacacaagcaggcaccaca
acaaacctggcaagccagattgagcgagcgccctttggccccgtcaccagtatggtcaga
gggaacggcatttcagaaagccgcactctggatctcgattaccgtgtcaccggcatcgac
gctgctagggtgcattcgctggtctatcggtacacgccagactcgttgatttcagccata
gacgacaatctcagctcatcagtcaatcagtcactcggttatgacgcggttggccgcatc
acctctgctgaggggatctatggcgttttgggctatggctatgacgccaccggcaacagg
acctcgatcacgaccgatggcctgagccaaagctacaccatcaactacatgaacaactgg
ttggtgaaggccgggcaaacctccagaagctatgacgccaatggcaacctgacgaagcag
ggggcggataccttcacctatgacagccagaaccggctggtggccgcaacggtcgcggga
gtgactgtaagctacacatacaaccatctggatcagcgtgtaaccaagaccctaaacggg
catacccggctgctggtttacgacctggcaggaaacctcatcgaggagctggacgcggcc
actggagacgtgctggcggagtacatctggctcgatgggacacccttgggctttgttcag
tcaggacagacctaccaagtccacgtcgatcacctgggcaccccgaaggcactgaccgac
gtcagcggccaagtcgtttggaaggcgagctacagcccgttcggtaaggccagcatcatc
atccaggggccaaccttcaacctgcgattcccaggacagtattacgacgcggagaccggg
ttccactacaactggcggcgttactacgacccagcgaccgggcggtacattaccagcgac
cctcttggcctgatcgatggagtaaacacctacgggtatgtgcatggaaaccctatgtcc
aataccgacccgacgggtgaatttgcgtttgttggtgcaggtattggagctgggttggag
ctacttagccaactaatcgaaaataatgggagttggaaatgtgttagttggtcaaaagtt
ggaatcgccggagcgattggggctataggtggcggctgggcgtcaggagttttcagacat
gccagctccggtaaatcgtggttcaaattaagccaaaaatggagcaatgtctcacccaga
gtaaggaaagttcaaggggttccacgaggtaatgagcttcaccattgggctattcagaga
aatggcaagtttggcaaatatgttcctgactcaataaaaaaccatccttggaacttgaag
tccattccaagagatattcaccaaaacattcacggcaatggacctaccccatatagcgca
tttggtcgttggtggcacgggacgcctgaatgggcaaaagtagctcaagcctctcctgtt
agtggtggtttagctgattcaataaatgatgagggatgcggttgtgcaaattga
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