Vibrio cholerae O1 2012EL-2176: EN18_17885
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Entry
EN18_17885 CDS
T03389
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vcq
Vibrio cholerae O1 2012EL-2176
Pathway
vcq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EN18_17885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcq03019
]
EN18_17885
03400 DNA repair and recombination proteins [BR:
vcq03400
]
EN18_17885
Enzymes [BR:
vcq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EN18_17885
Messenger RNA biogenesis [BR:
vcq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EN18_17885
DNA repair and recombination proteins [BR:
vcq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EN18_17885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AIT30864
UniProt:
A0A0H4JKJ3
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All DBs
Position
1:2627776..2629611
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AA seq
611 aa
AA seq
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MTATLMAESSALFATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCY
QIPALVLEGVTLVISPLISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLK
LLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNVPV
MALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQ
CGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFG
MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPD
GAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPCGNCDICLDPPKRFDATEEAR
KALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLI
HKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSGKNYDKKLF
AKLRKLRKSIADDEGLPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFL
DLIQEHLTYHG
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcgactttaatggctgaatcttctgctctctttgccactcctgaacgtgttttg
cacgaggtgtttggctatcagcaatttcgcgtcggtcagcaagaggtgattgaggcggcg
ctggctgggcgtgatagcttggtcattatgccgactggcggtggtaaatcgctctgttac
cagatccctgcactggtgctggaaggggtcacgttagtgatttctcccctgatttcgctg
atgaaagatcaggttgaccagcttaaagccaacggtgtcgccgccgagtgtgtcaattcc
accttggcgcgcgaggaactgatcgcgatttataaccgcatgcatgctggccagctcaag
ctgctgtatgtgtcgccagagcgggtattgaccgccgagtttatcgaacggctcagccat
ctgccgttagccatgattgcggttgatgaagcgcactgtatttcgcaatggggacacgat
tttcgtcctgaatacgcctcattaggccagcttaagcagcgtttcccgaatgtgccagtg
atggcgctgacggcgactgcggatgacgcgacccgtcacgatatcatgcagcgtttgcag
ctcaatgagccgcatcagtatctgggcagctttgatcgcccgaacattcgctacatgctg
gtggaaaaacataagccggtttcacaagtgattcgttatctggaaactcagcgcgggcag
tgcggcatcatctattgtggcagccgtaaaaaagtggaaatgctcactgaaaagctgtgc
ggcaaccacattcgcgccgccagttaccatgcagggatggatgccgatgagcgcgcttgg
gtgcaagaagcgtttcagcgtgatgacctgcaaattgtggtggcgaccgtggcgtttggc
atggggattaataaacccaacgtgcgctttgtggtgcattttgatattccacgcaacatt
gaatcctactatcaggaaactggtcgcgcagggcgtgatggtttgcctgctgaagccatg
atgctgtacgaccctgccgacatgaactggctgcgccgtatgctcgatgaaaagcccgat
ggcgcgcaaaaacaggttgaaagccacaagctcaccgccatgggcgcgtttgctgaagcg
caaacttgtcgccgccaagtattgctcaattattttggcgaatatcgcgataagccatgt
ggtaactgcgatatctgcctcgacccgcccaagcgttttgatgccacggaagaggcgcgc
aaagccttgtcgtgtgtctatcgcgtcaatcaaaacttcgggattggctatgtggtggaa
gtgttgcgcggcatgcaaaacatccgcattcgcgaacatggtcacgacaaaattaccact
tatgggattggccgcgatcacagccacgattactgggtgagtattttccgccaactgatc
cacaaaggcatgctctaccaaaacatcacgcgcaactcgacattgcaactgaccgaagaa
gctcgccctttgctgcgcggtgaaatgaatattgagctggcggtaccgcgtttagatacc
gcggcgcgcgcggcgaaatccgacaaattgtcgggcaaaaactacgacaaaaaactgttt
gccaaactgcgtaagctgcgtaaatcgatcgccgatgacgaagggttaccaccgtatgtg
gtgttcagtgacgccaccttgattgatatggcggagatcatgccaacctcttatggcgaa
atgttggcggtgaatggggttgggcagcgcaagctggaaaaatacgccgacccgtttttg
gatctgattcaggagcatttgacctatcatggctga
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