Vibrio cholerae O1 2012EL-2176: EN18_19640
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Entry
EN18_19640 CDS
T03389
Name
(GenBank) RNA polymerase sigma factor RpoS
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
vcq
Vibrio cholerae O1 2012EL-2176
Pathway
vcq05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vcq00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
EN18_19640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcq03021
]
EN18_19640
Transcription machinery [BR:
vcq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EN18_19640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
AAA_18
Motif
Other DBs
NCBI-ProteinID:
AIT31165
UniProt:
A0A2V4NQD7
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All DBs
Position
1:2987534..2988541
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AA seq
335 aa
AA seq
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MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQ
MYLSEIGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDL
IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYL
RTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTR
ERVRQIQVEGLRRLREILVKQGLNMEALFNVEYDN
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcagcaataccgtaaccaaagtagaagagttcgattttgaagatgaagcactg
gaagtgctagaaactgatgccgagctcaccagtgatgaagaattagttgctgttgaaggg
gcaagtgaagacgttcgtgaagagtttgatgcttctgcgaaaagtcttgatgcgacccag
atgtatctcagcgaaattggtttttcaccgctccttactgccgaagaagaagtgctttat
gctcgtcgtgccttacgtggtgatgaagccgcacgtaaacgcatgattgaaagtaacttg
cgtctggtggtaaaaatttcacgccgttacagcaaccgaggattagcactgctcgatctg
attgaagaaggtaatcttggtctgatccgtgcggttgagaaattcgatccagaacgcggt
ttccgcttctctacctacgcaacatggtggatccgtcaaaccattgaacgtgcgctgatg
aaccaaacacgcaccattcgtctaccgattcatgtcgtcaaagagctgaacatttatttg
cgtactgctcgcgaattatcacagcgccttgaccacgaacctacaccagaagaaattgct
cttgagttagaccgacctgtcgatgatgtcactaagatgctgcgtcttaacgaacggatc
agctcagtggatacgccaattggtggggatggagataaggcactgctggatattttgcca
gactctcacaatgccgatcctgagttttcaactcaagatgatgacattcgtgaatcgctg
ctcaactggttggatgaacttaatccaaagcaaaaagaagtgcttgcgcgtcgctttggg
cttcttggctatgaaccatcgaccttggaagaagtgggtcgtgagatcaatctcactcgt
gagcgtgttcgccaaatccaagtggaaggtctacgtcgtctgcgtgagattttggtgaaa
caaggtttgaatatggaagcgctgtttaacgtcgaatacgacaactaa
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