Vibrio cholerae O1 O395: VC395_1501
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Entry
VC395_1501 CDS
T02099
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
vcr
Vibrio cholerae O1 O395
Brite
KEGG Orthology (KO) [BR:
vcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcr03019
]
VC395_1501 (hrpA)
Enzymes [BR:
vcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VC395_1501 (hrpA)
Messenger RNA biogenesis [BR:
vcr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
VC395_1501 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
HA2_N
AAA_22
T2SSE
ResIII
nSTAND3
NACHT
AAA_30
ABC_tran
SLFN-g3_helicase
RsgA_GTPase
AAA_23
Zeta_toxin
NTPase_1
TsaE
PhoH
LYTB
AAA_7
Motif
Other DBs
NCBI-ProteinID:
ACP09507
UniProt:
A0A0H3AL42
LinkDB
All DBs
Position
I:1562797..1566726
Genome browser
AA seq
1309 aa
AA seq
DB search
MTSSQPTPDSAAQPKANSAASLKKALGECLIKDRFRFSKRIDGASKIKNESARNAVFDEI
ALDIAQSMMVVEQRKQQMPKIEYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQL
PKICAELGRGKYGLIGHTQPRRLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQI
KLMTDGILLAEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSA
TIDPERFSKHFSNAPIIEVSGRTYPVEVRYRPLTGDDDSESDRDQLEGIFQAVDELCDEG
LGDILIFMNGEREIRDTADALSKRNLRDTEIVPLYARLSAGEQNKIFQPHAGRRIVLATN
VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICI
RLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLL
EELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQD
PRERPSDKQQSADDKHRRFNHEDSDFLTLVNLWHYIGQQQKALTSNQFRRQCKLDYLNYL
RVREWQDVYTQLHQSTREMGFKLNDEPGSYHAVHSAILVGLLSHIGMKDQEKNEYHGARN
ARFNIFPASGLFKKQPKWVMSAELVETSKLWARVVAKIEPDWIEPLAKHLSKRSYSEPHW
SKKNAAVMAYEKVMLYGIPIVPKRLVNYGTIDPVLSREIFIRSALVEGDWETKHAFFKQN
RALLAEVEELEHKSRRRDILVDDEELFQFYDQRVGTEVVSGRHFDAWWKTASRKTPDLLS
FEKEMLFKGDASHITDLDYPNFWHQGNLKLKLSYQFEPGENSDGVTVHIPLPILNQVEPH
GFDWQIPGLRHELVVSLIKSLPKTLRKNFVPAPNYADAFLARVTPFEMPLLDAMEKELRR
MTGVTVLREDWKLDQLPAHLKITYRAVDHRNRKLNESCDLHELKESLKEKVQETLSQVAD
DDIEQRDLHTWSFGELPKVYQQKRGGFEVRAYPALVDKKDSVEIKLFETEQEQLSAMRAG
QRRLILLNVPSPIKYLHANLPNKSKLGLYFNPYGKVLDLIDDCIACGVDKLIEERGGMVW
EPQAFEALKEHVRAELGDTVVEIAKQVETILTTAYNINKRLKGKVDFTMAFALSDVKAQI
EGLIFSGFATECGWKRLPDILRYMRAIERRMEKLPVDPNKDRLHMLKIESVANKYKELLN
KIPKGMAIPDNVREIRWMLEELRVSYFAQQLGTPYPVSDKRIINAIEAC
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
ttgacttcgtcacagcccacacccgattcggcagctcagccaaaagccaatagtgctgcc
agtttaaaaaaggcgctcggagagtgcctgatcaaagatcgttttcgttttagtaaacgc
attgatggtgccagtaaaattaaaaatgaatcggcacgcaacgcagtatttgacgaaatc
gcgctcgatattgcgcaatccatgatggtggtggagcagcgcaagcaacaaatgccaaaa
atcgagtatcccgctctgctgccagtcagccaaaaacgtgatgatattgcgcaggcgatt
gctcatcatcaagtggtgatcgtggccggtgaaaccggttcaggcaaaaccactcagcta
ccgaaaatttgtgcagaattaggccgtggtaaatacggtttgattggccacactcagccg
cgccgtcttgctgcgcgatcagtggcaaaccgcattgccgaagagatggaaaccgaactc
ggtggctttgttggctacaaagtgcgttttaccgaccaaatctctgatcagactcaaatc
aaattgatgactgacggtatcttgctggcggagatccaaaacgatcgtttccttaaccag
tacgacaccatcattatcgatgaagcgcacgagcgcagcctcaacatcgactttatcttg
ggctatctcaagcagcttttgccgcgtcgtcccgatctcaaagtcatcatcacctcggcg
accatcgaccctgagcgcttctcgaagcattttagcaatgcgccgatcatcgaagtctca
ggccgtacttatccggtggaagtgcgctatcgccctcttacgggggatgatgacagtgaa
agcgatcgcgaccaactggaaggcattttccaagcggtggatgagctgtgcgatgaagga
ttgggcgacattctgatcttcatgaacggtgagcgcgaaattcgtgataccgcggatgcg
ctttcaaagcgcaacctgcgtgatacggaaattgtgccactgtatgcacgtttgtcagcc
ggtgagcagaacaagattttccaacctcatgcgggtcgtcgcattgtgctggccaccaac
gtggcggaaacctcgctaacggttccgggcatcaaatacgttatcgacccaggtaccgcg
cgtatcagtcgttacagctatcgcaccaaagtgcagcgtttgccgattgagccgatttcc
caagccagcgctaaccagcgtaaaggccgctgtggacgtaccgaagaggggatctgtatc
cgcctctattcggaagaggatttcttgtcacgccctgagtttactgaccctgagattctg
cgcaccaacttagcctcggttattttgcagatgacggcattggggctaggcgatattgaa
gccttcccctttgtggaagcgccagataagcgcaacattcaagatggcgtgcgtctgctc
gaagagttaggggcgatcaacgatcaaatcaaagacccgaaaaaacgcctcaccgaaagt
ggtaagcagctagcgcgtttgccgattgatccacgtttggcacgcatggtgctcgaagcg
tctaaattaggctgtttgaaagaagtgatgattattgcttccgcgttgtcgattcaagat
ccgcgtgaaagaccgagcgacaagcagcaatcggccgatgacaaacatcgccgttttaac
catgaagattcagatttcctaacgttagtgaacctatggcactacatcggacagcagcaa
aaagcgttgaccagtaaccagttccgccgtcagtgtaagcttgactatctcaactatttg
cgcgtgcgtgaatggcaggatgtgtacacccaactgcatcaatcgactcgggaaatgggt
tttaagctcaatgatgaaccgggcagttaccatgcggtgcacagtgcgatcttggtcggt
ttgttgtcgcacatcggtatgaaagatcaggagaagaacgagtaccacggcgcacgtaac
gcacgtttcaacatttttcctgcctctggcttatttaaaaagcagccgaaatgggtcatg
tcggcagagctggtggaaacctccaaactgtgggcgcgcgtggttgcgaaaatcgaaccg
gattggattgagccactagcgaaacacctgagcaagcgcagttacagtgagccacattgg
tcgaagaaaaatgcggcggtgatggcgtatgaaaaagtgatgctgtacggcatcccgatt
gttcccaagcgcttggtcaactatggcacgattgatcctgtgctcagtcgcgaaattttc
attcgcagcgcactggtagaaggggattgggaaaccaaacacgccttcttcaaacaaaac
cgcgcgctactcgccgaagtggaagagttagaacacaaatcgcgtcgccgcgatattctg
gttgatgatgaagagttgttccaattctacgaccagcgtgtcggtaccgaagtggtgtct
ggtcgccattttgatgcgtggtggaaaaccgctagtcgtaaaacgccggatctgctcagc
tttgaaaaagagatgctgttcaaaggcgatgccagccacattaccgatctggattacccg
aatttctggcatcaaggcaatctgaaactcaaactcagttaccagtttgagccgggcgag
aacagtgacggtgtgacggtacacattccgctgccaatcttaaatcaagttgagccacat
ggctttgactggcagattcccggtttgcgccatgagttggtggtgagcttaattaaatcg
ctaccgaaaacgctgcgtaaaaactttgtgccagcccccaattacgctgacgcttttttg
gcgcgtgtaacaccgtttgaaatgccgctgctcgatgcaatggaaaaagagctgcgccgc
atgacgggtgtgacggtgctgcgtgaagattggaaactcgatcaactgcctgcgcattta
aaaattacttatcgcgcggtggatcatcgcaatcgcaagctcaatgaaagctgcgatctg
catgagctgaaagagagcttgaaagagaaagtgcaagagacactttcacaagtggccgat
gacgatatcgagcagcgcgatctgcatacgtggtcgtttggtgagctaccgaaagtgtac
cagcaaaagcgtggtggctttgaagttagagcttatccggcgttagtcgataagaaagac
agcgtcgaaatcaaactgtttgaaaccgagcaagagcagcttagcgcgatgcgtgccggt
cagcgccgtttgattttgcttaacgtgccatcaccgatcaaatatctgcacgccaatctg
ccgaacaaatctaaactcggtttgtactttaacccgtatggcaaagtgctcgatttgatt
gatgactgcattgcctgcggcgttgataagctgattgaagagcgcggcggcatggtgtgg
gagccacaagcatttgaagcgctcaaagagcatgtgcgtgccgagcttggcgatacagta
gttgagattgccaagcaggtagaaaccattttgaccacggcttacaacatcaataagcgt
ttgaaaggtaaggtggatttcacgatggcgtttgcgctttctgatgtgaaagcacaaatc
gaagggctgattttcagcggctttgcgactgagtgcggttggaaacgtctgccggacatt
ctgcgttacatgcgcgcgattgaacgccggatggaaaaactgccggtcgatcccaacaaa
gatcgtctgcatatgctgaaaattgaatcggtagccaacaagtataaagagctgctgaac
aagatcccgaaagggatggcgattcccgataacgtgcgagaaatccgctggatgctcgaa
gagttacgcgtgagttattttgctcagcaattgggtacgccgtatccggtttcggataag
cggatcatcaacgcgattgaggcttgttag
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integrated database retrieval system
