Vibrio crassostreae: IS519_06690
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Entry
IS519_06690 CDS
T08776
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
vcra
Vibrio crassostreae
Pathway
vcra03030
DNA replication
vcra03430
Mismatch repair
vcra03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vcra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IS519_06690 (holA)
03430 Mismatch repair
IS519_06690 (holA)
03440 Homologous recombination
IS519_06690 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcra03032
]
IS519_06690 (holA)
03400 DNA repair and recombination proteins [BR:
vcra03400
]
IS519_06690 (holA)
Enzymes [BR:
vcra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IS519_06690 (holA)
DNA replication proteins [BR:
vcra03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IS519_06690 (holA)
DNA repair and recombination proteins [BR:
vcra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IS519_06690 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delt_C
DNA_pol3_delta
DNA_pol3_delta_C
Shikimate_DH
Zot
Motif
Other DBs
NCBI-ProteinID:
UPR30954
LinkDB
All DBs
Position
1:1480946..1481971
Genome browser
AA seq
341 aa
AA seq
DB search
MRIFADRLSEQLAKQLSNVYLIFGNEPLLLQESREAIQKAAKQQGFEERHRFAIDSSLDW
NQVYDCTQALSLFSSRQIIELELPESGVNAAIAKELLAISEHIHSDILLILVGTKLTKAQ
ESAKWFKALSNQGHWVSCLTPDVSRLPQFVQARCRQIGLIPDPEAIQMLAQWHEGNLFAL
TQSLEKLALQYPDGKLTLVRLEESLSRHNHFTPFHWSDALLAGKGNRAQRILRQLEAEGV
EPVILLRSIQRELALLLQMQQQMKQMPIGQVFEKHRIWQSKKPLYNAALTRVSISQLHSL
LALLTQAELMTKTQYEQSPWPLIHQLSVEFCIPSASIPFHA
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatttttgctgaccgcttatcagagcaactggctaaacagttgagtaatgtttac
ctaatttttggtaacgaacctctactgctgcaagagagccgagaagcgattcaaaaggct
gcaaaacaacaaggctttgaagaacgtcatcgctttgcgattgatagcagtctcgactgg
aatcaagtctacgactgcactcaagcactgagcctattctctagccgtcagatcatcgag
cttgagctgccagagtcaggcgtcaatgccgcaatagcgaaagagctactcgcaatctcc
gagcatatccacagtgatatcctgctgatcttggtaggcactaagctaaccaaagctcaa
gaaagcgctaagtggtttaaggcactttcgaatcagggtcactgggtcagctgcctaacg
ccagatgtcagccgattacctcagtttgtccaagcacgctgccgtcaaatcggtttaata
ccagatcctgaagcgattcaaatgctggcgcaatggcatgagggtaatctatttgctctg
acccaaagcctagaaaaactggctctccaatacccagatggaaagctcacgttagtacgc
ttagaagaatcgctgagtcgacacaaccattttactccattccattggagtgatgcgtta
ttggcaggcaaaggtaaccgagcacaacgaatcctacgtcagctagaagccgaaggtgtc
gaacccgtcattttattgcgtagcatacaacgtgagcttgctctgctattacaaatgcag
caacaaatgaaacagatgccgattggtcaggttttcgagaaacaccgtatctggcaatct
aaaaagcctctttataacgccgcgctaacaagagtttcaatttctcaattacactctttg
ctcgcgttgctcactcaggctgaattgatgacaaaaactcaatatgagcagtcgccttgg
ccactaattcatcagttaagcgtagagttttgtatcccttcagcttcaataccatttcac
gcataa
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