Vibrio crassostreae: IS519_06755
Help
Entry
IS519_06755 CDS
T08776
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vcra
Vibrio crassostreae
Pathway
vcra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IS519_06755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcra03019
]
IS519_06755
03400 DNA repair and recombination proteins [BR:
vcra03400
]
IS519_06755
Enzymes [BR:
vcra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IS519_06755
Messenger RNA biogenesis [BR:
vcra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IS519_06755
DNA repair and recombination proteins [BR:
vcra03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IS519_06755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UPR30966
LinkDB
All DBs
Position
1:1493629..1495563
Genome browser
AA seq
644 aa
AA seq
DB search
MIEQKLKQVFGFDSLRNGQKQVIDNVLSGHSTAAIFPTGSGKSLCYQLPALELPHLTLVI
SPLLALMKDQLAFLHSKSISAAAIESSQDRQTTQQVMQSVRNGDTKILMISVERLKNERF
RQFISQVPISLLVVDEAHCISEWGHNFRPDYLKLPQYQKQLNIPQVLLLTATATTSVIQD
MKSKFEIDKERVVVTGFYRQNLDLSIQPCQQTSKLETLCNVVNQASLAPTIVYVTLQQTA
EMVAQQLRNAGVNAVAYHAGLKPENRDAIQHQFMNDDVSCIVATIAFGMGVDKSNIRRVI
HFDLPKSIENYSQEIGRAGRDGEASECILLANKHGLSTLENFVFGDTPDNISIQAVLKEI
YGNQSIGASGSNQWEIMLNQLSRESNIRQLPLKTLLVYLEIEGVIEPKYSYFADYKFKFI
RPKQQITEQFQSERRQFVEAIFQCSPQARVWCQVDFDALWTHFQADRQRVIAAIDYFNEQ
GWIELESKQITDVYAIHNTSEDMMQLSERLTELFKTKENSEINRLNQMLNFFEADTCLSS
RLASYFADDKAPTNCGHCSVCRGEVAILPTVDVEPIDDETVMTWIHEFISASQQLITDEA
ITRFLCGIATPLSTKLKASKMVGYGKLEQQPFSDTLARVKQLPR
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgattgagcagaagctaaaacaagtattcggattcgactcactgcgtaatgggcaaaag
caagttattgataacgttctatctggtcactcgactgccgcgatattcccgacaggctca
ggtaaatcgctgtgctatcaattaccagcattagagttgccgcatttaaccttggtgata
tcgccactgttagctttaatgaaagaccaactcgctttcctgcacagtaaaagcattagt
gcagcagcaatcgagtcaagccaagacagacaaaccacacaacaggttatgcagtcggta
cgtaacggtgacaccaagatcctcatgatctccgttgagcgcttgaagaacgaacgtttt
cgccagtttatctcccaagtaccgatctcactgcttgtggtagatgaagcgcactgtatt
tcagaatggggacacaacttcagaccagattatctgaagcttcctcaataccaaaagcag
ctcaatattcctcaggttctgctactgacagccactgcgaccacatcggttatccaagat
atgaagtcaaagtttgaaattgataaggagcgcgttgtggttacgggcttctatcgtcaa
aatctcgatctgtcgattcaaccttgccaacaaaccagcaagctagaaaccttgtgtaat
gtggttaaccaagcttctctcgctcctactattgtttatgtcactcttcaacaaacagca
gagatggtagctcagcaacttcgtaacgctggcgtcaatgccgtggcttaccatgcgggt
cttaaacctgaaaaccgagatgcaattcagcaccaattcatgaatgatgacgtgagctgt
atcgtcgcaaccattgcgtttggtatgggcgtggataagtccaatattcgccgagttatt
cactttgacttaccaaaatcgatagagaactactcacaagagatcggcagagctggccga
gatggggaagcgtctgaatgtattttactggctaacaaacatggtttaagcacactcgag
aacttcgtttttggtgatacgccagacaacatatcgatccaagcggtattaaaagagatc
tacggaaatcaaagcattggtgcttcaggctcgaatcaatgggagatcatgcttaatcaa
ctatcacgtgaatccaacattcgtcagttaccgctaaaaactctgctggtgtatctcgaa
attgaaggcgtgattgagcctaagtacagctacttcgcagactacaaatttaagttcatt
cgtccaaaacaacaaatcaccgaacagtttcaaagtgaacgtcgtcaatttgtcgaagcg
atcttccaatgttcacctcaagcaagagtgtggtgccaagtcgacttcgatgcgctttgg
actcacttccaagccgatcgccagcgtgtgattgcggctatcgactacttcaatgaacaa
ggttggattgaattagaaagcaagcagatcaccgatgtctacgcgatccacaatacttct
gaagatatgatgcaactgtcagagcgtctaactgagttgtttaaaaccaaagaaaacagc
gagataaaccgtcttaaccagatgctgaacttctttgaggcggatacttgcctaagctca
cgccttgcgagttactttgccgatgataaggcaccaacaaactgcggtcactgctctgta
tgtcgaggagaagtggcaatattaccaaccgttgatgttgaacctatcgatgatgagacg
gtgatgacatggatacatgagtttatttcggctagccaacaactgattaccgatgaggcg
attactcgcttcttatgcggaatagccaccccgctgtcaaccaaactgaaagccagtaaa
atggttggctacggtaagctagagcagcaaccgttcagtgataccttagcgcgagttaaa
cagcttcctaggtaa
DBGET
integrated database retrieval system
