Vibrio crassostreae: IS519_06890
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Entry
IS519_06890 CDS
T08776
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vcra
Vibrio crassostreae
Pathway
vcra03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vcra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
IS519_06890 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcra03400
]
IS519_06890 (recB)
Enzymes [BR:
vcra01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
IS519_06890 (recB)
DNA repair and recombination proteins [BR:
vcra03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
IS519_06890 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
SLFN-g3_helicase
AAA_11
AAA_12
KaiA_N
ResIII
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
UPR30992
LinkDB
All DBs
Position
1:complement(1523137..1526811)
Genome browser
AA seq
1224 aa
AA seq
DB search
MTTTSSVQVIAPKTLDTMTFPLHGARLIEASAGTGKTFTIAGLYLRLLLGHGTAGPQGDL
TEATRHHEPLTVDQILVVTFTEAATAELRDRIRARIHDARIAFARGQSDDPVIAPLLQAI
DDHAGAAKTLLNAERQMDEAAVYTIHGFCQRMLTQNAFESGSRFDNEFVTDESHLKAQVV
ADYWRKQFYPLPIQLAGEVRNIWGSPASLLADVNRYLTGSPLKLTVEAMSGDLQTLHNQN
LDKVKQLKALWCESEADFLALISGSDVNKRSYTKKSLPTWLEAVTAWAQSDTNDYQFPDK
LEKFSQATLIEKTPKGTAPQHAVFEAIEDFLSSPADLKAPLLAHAITHCRTMLAKAKQQK
QWLSFDDLLTQLSASIDVDEQSLLVERIRTLYPVAMIDEFQDTDPLQYSIFSRIYLDNPQ
CGLFMIGDPKQAIYGFRGADIFTYIKARNQVSAHYTLGTNWRSSADMVSAVNQVFMNSDS
PFIYDQDIPFLPVAASPSADKRQWVMNGQTQHALTFWLQDAEDKPLPKGEYHKAMAEATA
SQIQTILTASQNEQAYFDNGKKQHAVNAGDIAVLVRTGSEGRLIKNALSEQGIASVYLSN
RDSVFTSLVAQDIQRLLQGVLTPENDRALRASLASELFALDAASLDELNNDEVVWENVVN
EFREYRKLWLQRGVLPMLRSVISKRHLAERLLEEENGERSLTDLMHIGELLQQARQELDS
DYGLLRWLAEAISDAQNGLGGSEDDIQRLESERNLVQIVTIHKSKGLEYDLVFLPFVASY
REASEGKFYDHESDTTVLDITGSDSALAQADKERLAEDLRLIYVALTRAVYGCFIGMAPL
RKGRSTKEPTGVHLSAMGYLVQNGQEQGIAELHQALSAIEGKNSSVLLSETPTAHEQIFV
QTEQVSDNLQASELKASIDRAWRITSYSGLVKQGSHGANHDATIEVSGFDIDSADEQDES
ELIEPERSIFTFPRGARPGTFLHTLFEDIEFTEPATSEHNTQVITHLLESEQYELEWLPV
LQQLVDTVLNTALDGKNLKLSEKDSTQRLVEMEFLLPIEVLAASELNQTIQYHDPLSAKA
GDLGFQTVQGMLKGFIDLVFEHQGKYYVLDWKSNHLGDDVAVYHGEALKSAMADHRYDLQ
YQIYALALHRFLRSRVADYSYEQHFGGVYYLFLRGMDGQSQQGVFSAKPTLALLDEMDQL
IDGKVIDRRSAQLNDDETGQMGLL
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccacaagcagtgttcaggtaatcgctccaaaaacactcgataccatgacgttt
ccacttcatggcgcgcgtttaattgaagcatcggcgggtacgggtaagacatttaccatt
gctggcttgtatttgcgcttactgctggggcacggtactgctgggccgcaaggtgatctg
acggaagccacacgacaccatgagccactaaccgtagaccaaattctagtggtgaccttt
actgaagcggcaacggctgagctgcgtgatcgtatccgcgcgcgaatccatgatgcacgt
atcgcgtttgcacgtgggcaaagtgacgacccagtgattgcgcctttgttacaagccatt
gatgatcatgctggtgctgcgaaaaccttactcaatgccgaaagacaaatggatgaggcg
gcggtatacaccattcacggcttctgtcagcgtatgctgactcaaaatgcctttgagtct
ggaagccgttttgataatgaatttgtgaccgatgaaagtcacctgaaagcgcaagtggta
gctgactattggcgtaagcagttttacccgctgccaattcaactggcgggtgaagtgcga
aatatttggggctctcccgcttcgttattggctgacgtaaatcgctacctgacgggttct
ccactaaagctaactgtggaagcaatgtcgggtgacttgcaaactctgcacaatcaaaac
ctagataaagtgaagcaacttaaagcgttgtggtgtgaatctgaagcggactttttggct
ttgatttcaggttcagatgtgaacaagcgcagctacactaagaagtctttgcctacttgg
ttagaagcggtaacagcatgggcgcagagcgacaccaatgattaccagttcccagataaa
ttggagaagttctcacaagccactctaattgaaaaaacaccgaaaggcacggcacctcag
cacgccgttttcgaagcgattgaggacttcttaagttctcctgcagacctgaaagcccct
ttgttggcacatgcgattactcattgtcgaaccatgttagctaaggctaaacagcagaaa
cagtggttatcgtttgatgatttgctaactcagttatccgcgtccattgatgtggatgag
caatcactgctggtggagagaattcgaaccttatacccagtggcgatgatcgatgaattc
caagataccgatccgctgcaatacagcatttttagccgaatctatttagataacccgcaa
tgtggtctgtttatgatcggtgacccgaagcaggctatttacggcttccgtggcgcggat
atctttacctacattaaggcaagaaaccaagttagtgctcactatacgttaggcactaac
tggcgttcgagtgctgatatggtgagtgcagtaaaccaagtgtttatgaattcggatagc
ccgtttatctacgaccaagacattccatttttgcccgtagcagcgagcccatcggctgac
aaacgccaatgggtgatgaatggtcaaactcagcacgcgctcaccttttggctgcaggat
gcagaagataagcccttaccgaaaggcgaatatcacaaggcaatggctgaggcgacggcg
agtcaaattcaaaccattctgaccgcttctcaaaacgagcaagcttattttgataacggt
aaaaaacaacatgctgtgaatgcaggtgatattgctgtcttggttcgaaccggtagtgaa
ggtcgtctgattaagaacgcgttgtcggaacaaggcattgcgagcgtgtacttatctaac
cgagatagcgtgttcaccagcttggtcgcgcaagatattcaacgcctattgcaaggggtg
ttgacgcctgaaaacgaccgtgcgttgcgcgcgagtttagcctcagagttgtttgctttg
gatgccgcatcattggatgaactcaataatgatgaagtggtttgggaaaacgtcgttaac
gaattccgagaatatcgtaagttgtggctgcaacgtggcgtattaccaatgctgcgtagt
gtgataagtaaacgccacctcgcggaacgcttactagaagaagaaaatggtgagcgctca
ctcactgatttgatgcacattggcgaactgttgcaacaagctaggcaggagctcgacagc
gactatggcttgttacgttggctagcagaagcgatatcagatgcgcaaaatggtttaggt
ggcagtgaagacgacattcaacgccttgaatcagagagaaacttagttcaaatcgtcact
attcataaatcgaaaggtttggaatatgacctcgtattcctgccgttcgtggcgagttat
cgtgaagcgagtgaaggtaagttctacgaccatgaatcagataccacagtgctggatatt
actggcagtgatagtgctttggcacaagccgataaagagcgattggcggaagacttacgc
ttgatttatgtggcgctgactcgtgcagtctatggatgttttattggtatggctccttta
cgtaaagggcgttcaaccaaagagccaactggcgttcacttgagtgctatgggctatttg
gttcaaaacggacaagagcaaggcatcgccgagttgcatcaagctctatcggcaattgag
ggtaagaattcaagcgtattactgtctgaaacgcctactgctcacgaacaaatttttgtg
caaacagagcaagtgagtgacaacttacaggccagtgaacttaaagcttcaattgaccga
gcttggcgtatcaccagttactcagggttggtcaaacaaggcagtcacggtgcgaaccat
gatgcgaccattgaggtgtctggctttgatattgactcggcggatgaacaagatgagtct
gaactgattgaacctgaacgttctatcttcactttccctcgtggtgctcgcccgggtacc
ttcttgcacaccttatttgaggatattgaatttaccgagccagcaaccagcgaacacaac
acgcaagtaatcactcacttattagagtcagagcaatacgaactcgagtggctacccgtg
cttcaacaacttgtcgatacggtgctgaacaccgcgttggatggtaaaaatctaaaactt
agcgagaaagactcaacgcaacgtttagtcgagatggaattcttgttgccgatcgaagtg
ttagccgcatctgaattgaatcaaaccattcagtatcacgatccgctatcagcaaaagcg
ggtgaccttggcttccaaaccgtgcaaggcatgttgaaaggcttcatcgatttggtgttc
gagcaccaaggtaaatactatgtcctcgactggaaatcgaatcatttaggtgatgacgtt
gccgtctaccatggtgaggcattgaaatcggctatggccgaccaccgttacgatcttcaa
tatcaaatctatgcgttggcattgcaccgcttcctacgcagtcgcgttgcagattacagt
tatgaacaacatttcggtggggtttattacttgttcctaagaggaatggatggccaatca
caacaaggtgttttctcggcgaaaccaacactggctttgctcgatgaaatggatcaattg
attgacggtaaagtgatagacagacgttcagcgcaattgaatgacgatgaaactggtcag
atggggcttttataa
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