Vibrio crassostreae: IS519_08690
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Entry
IS519_08690 CDS
T08776
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
vcra
Vibrio crassostreae
Brite
KEGG Orthology (KO) [BR:
vcra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcra03019
]
IS519_08690 (csrD)
Messenger RNA biogenesis [BR:
vcra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IS519_08690 (csrD)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
DUF4390
SUS_N
Motif
Other DBs
NCBI-ProteinID:
UPR28326
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Position
1:complement(1960994..1963009)
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AA seq
671 aa
AA seq
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MRYTPTLKLSTRLVAFVTVIVISAMFILFIGGTLSFKRIGQEYLDHYLVGIVDVVDKEME
DPDAAYSMQRWMPKMLQASNIVEMKLSNKTGIVYRFKDTSPQIDPNRLYEKSFILERNEG
YRIEFKALPPYIGYNYSMEAMWSITLAVALVLFCLARGVRWLKEQLMGSEILEERGRMIL
AGQVEAHAKGDEREWPYTASEALDVLIEELQDARQERSRFDTFIRTHTFLDKLTGTANRV
LFDNKLESALHESGARGGVLLIRIDEWEQVSDANDKQITDGFIIEVGEVLSNIVQRYPDV
IFSRYYEADFAVFIPHQGAKDIATLAAQCLRQLDKLTPPEPLESDNWCHIGVTMYTEGER
HSQIMDETETALKSAQLERINNWSRYPKENKNELDRGSVRWRTLLDKALLPENLVIFAQR
CYLMPESGQANELHREIFTRIQDPEKGLLKSSRFMPAVEQVGYQAQMDQSVLKVVLKSLK
ESTQSINYSVNLNVTPFANKQHFKWFRSELLQLSAQHRSQLAFEFPEGHLIAHLDYMRPV
AKMLRGLGCKVVVGQAGRTIVSTHYIKDLKVNYIKLHRSLIKKIDQRHENQLFVRSLIGA
CGDSPTQVIAVGVETKQEKNTLIELGINGYQGRYFDEEQQIIPLPNQAEKAAKAESVVKV
GRRNRWRKSSS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagatataccccgacactaaaattgagcactcgattggtcgcatttgtcaccgtgata
gtgatcagcgcgatgttcattctttttattggtggcacactttcctttaagcgtattgga
caggaatatttagaccattatttggttggcattgtcgacgttgtagataaagagatggaa
gaccccgacgccgcgtattcaatgcagcgttggatgcctaagatgttgcaggcgagcaat
attgttgagatgaaactctcgaacaagacaggcatcgtttatcgtttcaaagatacctcc
ccacaaattgatcctaatcgtctttatgagaaaagcttcattttagagcgtaatgaaggc
taccgaatcgaatttaaagcacttcctccttatattggctacaactactcaatggaagcg
atgtggtcaattactttggctgtcgcattagtccttttctgtcttgctcgcggtgttcgt
tggttgaaagagcaactcatgggttctgagatcttggaagagcgaggaagaatgatcttg
gccggtcaggttgaagctcatgcaaagggagatgagcgagagtggccttataccgcaagt
gaagccttagatgtcttgatcgaggagctgcaagatgctcgtcaagaacgaagtcgcttt
gatacctttattcgtacccatactttcctagataaacttacgggaacggcaaaccgagtt
ttattcgataataagctggaatcggcactgcatgaaagtggcgcacgaggcggtgtgtta
ctgatacgtatcgacgaatgggagcaagttagtgatgcaaacgacaagcaaatcactgac
ggctttattattgaagtcggcgaagtactgtcgaatatcgttcagcgctatcccgatgtc
attttttctcgctattacgaagcggactttgctgtatttatccctcatcagggagcaaaa
gatattgcgaccttggctgctcagtgtttaaggcagttagataagctaaccccgccagag
cctttagaatcggataactggtgtcatatcggtgtgaccatgtataccgaaggtgagcgt
catagccagatcatggatgaaacggaaacggcattaaagagtgctcagttagagcgtatt
aataactggagccgctacccgaaagagaataagaatgagcttgatagaggcagtgttcgt
tggagaacattacttgataaagcgctgcttcctgaaaatttagtaatctttgctcagcgg
tgttatcttatgccggaatctggtcaagctaatgaattacatagagaaatatttactaga
attcaggatcctgagaaaggtttattgaaatcgtctcgatttatgcctgcggtagagcaa
gtgggttatcaagctcaaatggaccaatcggttctaaaggttgtgttgaaatcactgaaa
gaatcaactcaatcgattaactattcggtgaatctgaatgttaccccgtttgctaataaa
cagcactttaagtggtttaggagtgagttgttacagctctctgctcaacaccgatctcag
cttgcgtttgagtttccagaagggcacttgattgctcatcttgattatatgagaccggtg
gcaaagatgctgcgaggtttagggtgtaaagttgtggtcggccaagctggacgaaccatt
gttagcactcactacattaaggacttgaaggttaattatattaagcttcatcgaagccta
ataaagaaaatagatcaaaggcatgagaaccaactgtttgttcgaagcttaattggggcg
tgcggtgattctccaactcaagttattgctgttggagtcgagacaaaacaagaaaagaat
accttgatagagttaggcattaacggctatcaagggagatatttcgacgaagaacaacaa
attatccctttgcctaatcaagcagaaaaggccgcgaaagcggaatctgttgtcaaagtt
ggacgaagaaatcgatggcgtaagagtagtagttaa
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