Vibrio crassostreae: IS519_11360
Help
Entry
IS519_11360 CDS
T08776
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vcra
Vibrio crassostreae
Pathway
vcra03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vcra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IS519_11360 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcra03021
]
IS519_11360 (rpoB)
03400 DNA repair and recombination proteins [BR:
vcra03400
]
IS519_11360 (rpoB)
Enzymes [BR:
vcra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IS519_11360 (rpoB)
Transcription machinery [BR:
vcra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IS519_11360 (rpoB)
DNA repair and recombination proteins [BR:
vcra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IS519_11360 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
DUF7073
Motif
Other DBs
NCBI-ProteinID:
UPR28762
LinkDB
All DBs
Position
1:2526325..2530353
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQDPEGQYGLEAAFRSVFPIQ
SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDRDAPAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPASIILRALGKSTEEILDLFFDKVNFEVKDQTLLME
LVPDRLRGETASFDIEANGKTYVETGRRVTARHIRQLEKDGVEHIEVPVEYIVGKVASKD
YINEATGEIIVGANQEISLEALANLSQAGHKALQTLFTNDLDHGPFMSDTLRADSTVDRI
SALVEIYRMMRPGEPPTKEAAESLFESLFFSEERYDLSTVGRMKFNSSIEREEEEERGTL
DESDIIEVMKKLIGIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNDYGFLETPYRRVVDGVVT
EEVDYLSAIQEGQFVIAQANTILTEEGTFADELITARQKGESGLHPRDHVDYMDVATNQV
VSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNIAVDSGVTAVAKR
GGQVQSVDASRIVVKVNEDELVPGEAGIDIYNLTKYTRSNQNTCINQRPTVLPGEPVARG
DVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELSCVA
RDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDL
TEEFQILEGGLLNRVKAVLLSGGYSEAKLDTIGRKQWLEQVLEDDALQTQLEQLAEQWDE
LKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMVKEQQELHK
FREFLQKVYDLGDTRQKVDIAELSDDQVRTLIKNLRGGLPIATPVFDGASESLIKELLKL
GDLPESGQLKLFDGRTGDSFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHSMEPGMPE
SFNVLLKEIRSLGINIELEDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttataccgagaaaaagcgcatccgtaaggattttggtactcgtccacaa
gttttggacattccatacctgttatcgatccagcttgattctttcgacaaattcatcgaa
caggatccagaaggtcaatacggtcttgaagctgctttccgttctgtatttccaattcag
agctacaacggcaattctgagctgcaatacgttagctaccgtcttggtgagccagttttt
gacgttaaagaatgtcaaatccgcggtgttacttactcaaagccactacgcgtaaaacta
cgtctagttatctttgatcgagatgcaccagcaggtactgtaaaagacattaaagaacaa
gaagtctacatgggcgaaattccgcttatgacagacaatggtactttcgtaattaatggt
accgagagggttatcgtatcccagctgcaccgaagcccaggcgtgttcttcgacagtgat
aagggtaagacccactcatcaggtaaagttctttataacgcacgtgtaattccttaccgt
ggctcatggttagactttgagttcgatcctaaggataacttattcgtacgtatcgaccgt
cgtcgtaagctaccagcatcgattattcttcgtgcacttggtaaatcgactgaagagatc
ctagatctgttcttcgacaaagtgaacttcgaagttaaagaccaaactcttcttatggag
ttggttcctgatcgtctacgtggtgaaactgcgtcattcgacatcgaagcaaacggcaaa
acttacgttgagactggtcgtcgtgttactgctcgtcatatccgtcaacttgaaaaagat
ggcgttgagcacatcgaagtaccagtagagtacatcgttggtaaagttgcatctaaagat
tacatcaatgaagcaactggcgagatcatcgttggcgcgaaccaagagattagcctagaa
gcacttgctaacctgtctcaagcaggtcacaaggctctacaaactctgttcacgaatgac
ctagatcacggtccattcatgtcagacactctacgtgcagatagcacagtagatcgcatc
tctgcattggtagaaatctaccgcatgatgcgtcctggcgagccaccaacgaaagaagct
gcagagtctctattcgaaagcctattcttctctgaagaacgttacgacctatcaactgta
ggccgtatgaagttcaacagctctatcgagcgtgaagaagaagaagagcgtggtactctg
gatgaatcagacatcatcgaagtgatgaagaaactgattggtatccgtaacggtattggt
gaagtggacgatatcgaccaccttggcaaccgtcgtatccgttctgtaggtgaaatggca
gaaaaccaattccgtgttggtctagttcgtgtagaacgtgccgttaaagagcgcctaagc
cttggtgaccttgatgcaatcatgcctcaagatcttatcaacgctaagccgatctctgct
gcagttaaagaattctttggctcttcacagctttcacagttcatggaccaaaacaaccca
ttgtcagaagttacgcacaaacgtcgtatctctgctttaggtcctggtggtcttactcgt
gagcgcgcaggcttcgaagtacgtgacgttcacgtaactcactacggtcgtctatgtccg
atcgaaacgcctgaaggtccaaacatcggtctaattaactcgctatctgcgtttgcacgt
tgtaacgattacggtttcctagaaactccgtaccgtcgtgtagtagatggtgtagtaaca
gaagaagttgattacctgtctgcaatccaggaaggtcaattcgtaatcgcgcaagcaaac
accattcttactgaagaaggtacgtttgcagatgagctaatcacagctcgtcaaaaaggt
gaatctggtcttcacccacgcgatcacgttgactacatggacgttgcgacaaaccaagta
gtatctatcgctgcttcgcttatcccgttcctagaacacgatgatgcgaaccgtgcattg
atgggtgccaacatgcaacgtcaagctgtaccaacacttaaggctgataagcctctagta
ggtactggtatcgaacgtaacatcgcagttgactctggtgttacagcggttgctaaacgt
ggtggtcaagttcagtctgtagacgcttctcgtatcgtagttaaggttaacgaagatgaa
ttggtacctggcgaagctggtatcgatatctacaacctaactaagtacacgcgttcgaac
caaaacacatgtattaaccaacgtccaactgtacttcctggtgaaccagttgcacgcggc
gatgttcttgctgatggtccttcaacagaccttggtgaactagctcttggccaaaacatg
cgtatcgcattcatgccttggaacggttacaacttcgaagactcgatcttagtatctgag
cgcgtagttcaagaagaccgtttcacgacaatccacattcaagaactatcttgtgtggct
cgtgatactaagctgggttctgaagagatcacagctgatattccaaacgtaggtgagtct
gctctgtctaaactagacgagtcaggtatcgtttacattggtgctgaagttaagggtggc
gacatcctagttggtaaagtaacccctaaaggtgaaactcaactgactcctgaagagaag
ctactacgtgctatcttcggtgagaaagcatctgatgttaaagatacttctctacgtgta
ccaaactctgtttcgggtactatcatcgatgtacaagtcttcactcgcgatggcgtagag
aaagacaagcgtgcacttgaaatcgaacagatgcagcttaaagaagctaagaaagaccta
actgaagagttccaaattcttgagggtggccttcttaaccgtgttaaagctgtacttctg
tctggtggttactctgaagctaagcttgatactatcggtcgtaagcaatggctagagcaa
gttctagaagacgatgcgctacaaacacagcttgagcaacttgctgagcagtgggatgag
ctaaaagcagacttcgataagaagtttgaaactaagcgtcgtaaaatcactcaaggtgat
gatctagcgcctggcgttcttaagattgttaaagtttacctagcggttaaacgtcgtatc
cagcctggtgataagatggccggtcgtcacggtaacaaaggtgtaatctctaagattaac
cctgttgaagacatgccatacgatgagaaaggtcagcctgtagacatcgtacttaacccg
ctgggtgtaccatcgcgtatgaacatcggtcagatcctagaagttcacttaggtttggct
gcgaaaggtatcggtgacaagatcaaccaaatggttaaggaacaacaagaactgcataag
ttccgtgagttcctacagaaggtttacgatcttggtgatactcgtcagaaagttgatatt
gctgaactgtctgatgatcaagttcgtacactgatcaagaacctacgtggcggtctaccg
attgctactcctgtgttcgacggtgcttctgagtctctaatcaaagaactacttaaactg
ggtgatctgccagaatctggtcagcttaaactgtttgatggtcgtactggtgattcgttt
gagcgtcctgtaactgttggttacatgtacatgctgaaactgaaccacttggttgatgac
aagatgcatgctcgttcaactggttcttacagcctagtaactcagcaaccacttggtggt
aaagctcagttcggtggtcagcgtttcggtgagatggaagtatgggcactagaagcatac
ggtgctgcatatactctacaagaaatgctaacagttaagtcagatgacgttaacggccgt
actaagatgtataagaacatcgtagacggtaaccatagcatggaacctggtatgcctgag
tcgttcaacgtactgttgaaagagattcgctcgctaggtatcaacatcgagctagaagac
gaagagtaa
DBGET
integrated database retrieval system
