Vibrio crassostreae: IS519_11365
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Entry
IS519_11365 CDS
T08776
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vcra
Vibrio crassostreae
Pathway
vcra03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vcra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IS519_11365 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcra03021
]
IS519_11365 (rpoC)
03400 DNA repair and recombination proteins [BR:
vcra03400
]
IS519_11365 (rpoC)
Enzymes [BR:
vcra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IS519_11365 (rpoC)
Transcription machinery [BR:
vcra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IS519_11365 (rpoC)
DNA repair and recombination proteins [BR:
vcra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IS519_11365 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
UPR28763
LinkDB
All DBs
Position
1:2530445..2534647
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKSQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLATMDLHQEVEEMREELETTNSETKRKKVTKRLKLVEAFIASGNDPQWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGMATTIKAAKKMVEREEAIVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRDKINVKGEGMYLAGPAEAEKAYRTK
TAELHARVKVRITETVVDEDGNSTTETKMVDTTVGRAMLWQIVPAGLPYSIVNQKLGKKQ
ISTLLNECYRKLGLKDTVVFADQIMYAGFAYAALSGVSVGIDDMVVPQAKYDEIESAEEE
VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMDNLSSETVINRDGEEEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVHEHDCGTHEGIDMMPHIEGGDVKVALSELAL
GRVVAEDVLKPGTEDVLIPRNTLIDEKWCQIMEDNSVDSMKVRSVVTCDADFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKTTGTVKL
HNAKFVVNKDKKLVITSRASEMTIIDEFGRTKEKHKLPYGSMLTKGDNAAVTAGEVVANW
EAHTMPIITEVAGRIQFVDMIDGITVSRQTDDLTGLSSSEVTDAAARPAAGKDMRPAIKL
VDEQGNDVMIPGTDMPAHYFLPGKAIVNIEDGAEVGIGDTLSRIPQKSSGNKDITGGLPR
VADLFEARKPKEPAILAEHTGTVSFGKETKGKRRLVITREGGDAYEEMIPKHRQLNVFEG
EKIERGDVIADGPETPHDILRLRGIHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITHSGDSPFLPGEQVEYHNVKIANRKLEAEGKELVRFERDLLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQERQKQREEEQEGPS
AEQATDNLAALLNAGFSSEE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagaatttgatgcaatc
aaaatcggtctatcttcaccagacatgatccgttcatggtcttttggtgaagttaaaaag
ccggaaacaattaactatcgtacgttcaaacctgaacgtgatggtctgttctgtgcacgt
atttttggtccagttaaagactacgaatgtctttgtggcaaatacaagcgcctgaagcac
cgtggtgttatctgtgagaagtgtggcgttgaagttacacaaactaaagttcgtcgtgac
cgcatgggccacatcgagctagcttcaccagttgctcacatctggttcctaaaatcactg
ccgtctcgtatcggtctactaatggatatccctctacgtgatatcgaacgtgttctttac
ttcgagatgtacgtagtaactgaaccaggtatgactgatctagaaaaatctcagatgctt
actgaagaagagtatctggatcgtctagaagagtggggtgacgaattcactgctaagatg
ggtgctgaagcgatcaaagatctgcttgcaacaatggaccttcatcaagaagtggaagaa
atgcgcgaagagttagaaacgactaactcagaaactaagcgtaaaaaagttactaagcgc
ctgaagctagttgaagcgttcattgcatcgggtaacgatccgcaatggatgattctgact
gtacttccggttctgccgccagatctacgtcctctagtaccactagatggcggtcgtttt
gcgacttcagatctgaacgacctttaccgtcgtgtgatcaaccgtaacaaccgtttgaag
cgtcttctagagctagctgctccggacatcatcgtacgtaacgaaaagcgtatgctgcaa
gagtctgttgatgcacttctagataacggtcgtcgtggtcgtgctatcactggttctaac
aagcgtcctctgaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aaccttctaggtaaacgtgtagactactctggccgttctgtaatcacagtaggtccatac
cttcgtctacatcagtgtggtcttcctaagaagatggcacttgagctatttaagccgttc
atctacagcaagctagaaactcgtggcatggctacgacaatcaaagctgctaagaagatg
gtagagcgcgaagaagctatcgtttgggatatcctagacgaagtaatccgcgaacaccca
gtactgcttaaccgtgcacctacacttcaccgtctaggtatccaagcgtttgaaccagta
ctaatcgaaggtaaagcgattcagcttcacccactagtgtgtgcggcatacaacgccgac
ttcgatggtgaccaaatggcggtacacgtgcctctaactctagaagcacagcttgaagca
cgtacactgatgatgtcgacgaataacattctgtcgccagcgtcaggtgatccgatcatc
gtaccttctcaggacgttgtattgggtctttactacatgacacgtgacaagatcaacgtg
aaaggcgaaggtatgtaccttgctggccctgctgaggctgaaaaggcataccgtactaag
actgctgagctacacgctcgcgttaaagtacgtatcaccgagactgtagtagacgaagat
ggtaacagcactactgaaacgaagatggttgatacaactgtcggccgtgcaatgctatgg
caaatcgttccagctggcctaccgtacagcatcgttaaccaaaagttaggtaagaagcag
atctctactcttcttaacgagtgttaccgtaagcttggtctaaaagatacagtagtattt
gctgaccaaatcatgtacgcaggttttgcatacgctgcactttctggtgtttctgtaggt
atcgacgatatggttgtacctcaagcgaaatacgatgaaattgaatctgctgaagaagaa
gttcgcgaaatccaagagcaattccaatctggtcttgttactgcgggtgagcgttacaac
aaagttatcgatatctgggcatctacgaatgaccgcgttgcgaaagcaatgatggataac
ctatcttctgaaacagttatcaaccgtgacggcgaagaagaacagcaagaatcgttcaac
agcatctacatgatggccgactcgggcgcacgtggttctgcagctcagattcgtcagcta
gcaggtatgcgtggtctgatggcgcgtccagatggttcaatcatcgaaacgccgatcaca
gcgaactttaaagaaggtctaaacgtccttcagtactttatctcaacgcacggtgctcgt
aaggggcttgcggatacagcactgaaaacagcaaactcgggttacctaactcgtcgtcta
gtagacgttgctcaagacgttgtagtacacgaacatgactgtggcacgcatgaaggtatc
gatatgatgcctcacatcgaaggtggtgacgttaaagttgcactttctgagcttgctcta
ggtcgtgtagtagctgaagacgttcttaagcctggtactgaagatgtactgattccacgt
aatactctgattgatgagaagtggtgtcaaatcatggaagacaactcagtagatagcatg
aaagtgcgctctgttgttacctgtgatgcagacttcggttgttgtgcacagtgttacggt
cgtgacctagcacgtggtcacctagtgaaccaaggtgaagcagttggtgttatcgctgca
caatctatcggtgaaccgggtacacagctaacgatgcgtacgttccacatcggtggtgcg
gcatctactgcagcagcagagaacagcatccaagctaagacaactggtactgtgaaactt
cacaatgctaagttcgtagttaacaaagataagaaactggttatcacttctcgtgcatct
gagatgacgattattgatgaattcggccgtactaaagagaagcacaaacttccttacggt
tcgatgctaaccaaaggcgacaacgcagcagttactgctggtgaagttgtagctaactgg
gaagcgcataccatgccaatcatcactgaagtggcaggtcgtatccaattcgtagatatg
atcgatggtattacagtttctcgtcaaactgacgatctaacgggtctttcttcaagtgaa
gttacagacgcagcagctcgcccagcagcaggtaaagatatgcgtccagctatcaaactt
gttgatgagcaaggtaacgacgtaatgatccctggtactgatatgccagctcactacttc
ctacctggcaaagcgattgtaaacattgaagatggcgctgaagttggcatcggtgacaca
ctatctcgtatccctcaaaaatcgagcggaaacaaagatatcaccggtggtctaccacgc
gtagctgacctattcgaagctcgtaagcctaaagagcctgcgatccttgctgagcacaca
ggtactgtgtctttcggtaaagaaacgaaaggtaagcgtcgtctagttatcactcgtgaa
ggcggtgacgcttacgaagagatgattcctaagcatcgtcaattgaacgtgttcgaaggt
gagaagattgaacgtggtgatgtaatcgccgacggtcctgaaactccacacgatatcctg
cgtctacgtggtatccacgcagtaactcagtacatcgcgaacgaagttcaagaagtttac
cgcttacaaggcgtaaagattaacgataagcacatcgagactatcgttcgtcaaatgcta
cgtaagtgtacaatcactcattctggtgactctccgttcctacctggcgaacaagttgag
taccacaatgttaagattgctaaccgtaagctagaagctgaaggtaaagaactagtacgt
ttcgaacgtgatctactaggtattactaaagcatctcttgcaactgagtcattcatctca
gctgcatcgttccaagaaacgactcgcgtactaacagaagctgcggtttctggtaagcgt
gatgaccttcgcggtctgaaagagaacgtaattgttggtcgtctgatcccagctggtact
ggtttcgcataccaccaagagcgtcaaaagcaacgtgaagaagagcaagaaggtccttca
gctgaacaagctactgacaatctagcagcacttctaaacgctggtttctcttcagaagag
taa
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