Vibrio crassostreae: IS519_12325
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Entry
IS519_12325 CDS
T08776
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
vcra
Vibrio crassostreae
Pathway
vcra02020
Two-component system
vcra02040
Flagellar assembly
vcra05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vcra00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
IS519_12325
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
IS519_12325
09142 Cell motility
02040 Flagellar assembly
IS519_12325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcra03021
]
IS519_12325
Transcription machinery [BR:
vcra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IS519_12325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_21
Motif
Other DBs
NCBI-ProteinID:
UPR28949
LinkDB
All DBs
Position
1:complement(2726577..2728037)
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AA seq
486 aa
AA seq
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MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLDVEEGNEDTPTSE
EKPSSDEKETVEATEQDLPDSSDLIEKSEIGNELEIDTTWEDVYSANTGNTGIAIDDDMP
VYQGETTQSLHDYLLWQLDLTPFTDTDRSIAFALIDAIDDYGYLTVTCEDILENFDNEEI
ELDEIEAVRKRIQQFDPLGVGSVNLQDCLLLQLATFPQDTPWLNEAKLVLTSHIDQLGNR
DYKLVIKETKLKEAELREVLQLIQQLDPRPGSKITPDETEYVVPDVSVFKDLGKWLVTIN
PDSVPKLKVNQQYADLGSKGNSADNQYIRSNLQEAKWLIKSLESRNETLLKVARCIVEHQ
RDFFEHGEEAMKPMVLNDVALAVDMHESTISRVTTQKFMHTPRGIFELKYFFSSHVSTDN
GGECSSTAIRALIKKLVAAENTAKPLSDSKIAALLADQGIQVARRTIAKYRESLGIAPSS
QRKRLL
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccctcattacaacttaagctaggccaacagttagcaatgactcctcaattgcag
caagcgattcgtttgttacaattgtctactttagatttgcagcaagagattcaagaagca
cttgaatctaacccactactcgatgtcgaagaaggcaatgaagatacgccaacatcggaa
gaaaaacctagcagtgacgaaaaagaaacagttgaagccacagagcaagacttacctgat
agttcagacttaatcgaaaaatcagagattggcaacgaactagaaatcgacacaacttgg
gaagacgtctacagcgcaaacaccggcaatacgggcattgcgattgatgacgacatgccg
gtttatcaaggcgaaactactcaaagcctacacgattacctactttggcaactcgactta
acaccattcactgacactgaccgaagcatcgcttttgcactaatcgatgccatcgatgac
tatggctacctcactgtaacttgtgaagacatccttgaaaacttcgataacgaagagatc
gagcttgatgagattgaagccgttcgcaaacgaattcagcaatttgatccgttaggcgtt
ggttccgtgaacctgcaagattgcttgttactgcagctggcaacctttcctcaagacacg
ccttggctcaacgaagctaagttagtacttactagccatatcgaccaactcggtaatcgt
gattacaaactggttatcaaagagaccaagttgaaagaggcagaactgcgtgaagttttg
cagctaattcaacagctagaccctcgccctggcagtaagattactccagatgaaactgag
tatgtggttccggatgtatctgtcttcaaagatcttggcaaatggttagtgaccattaac
cctgatagcgtgcctaagctgaaagtgaatcagcagtacgctgatctgggcagtaaaggc
aacagcgccgacaatcaatacatccgctcaaatttgcaagaagcaaagtggctaattaaa
agcctagagagccgaaatgagacgctactcaaagttgcgcgatgcattgttgaacatcag
cgtgatttcttcgaacatggtgaagaagcgatgaagccaatggtgcttaacgacgttgcg
ttagctgttgatatgcacgaatccacgatctctcgtgtgacaactcaaaaattcatgcat
acgccacgtggcatcttcgaactcaaatactttttctcaagccatgtcagcactgacaat
ggcggtgaatgttcatctacagcaattcgcgcactcattaagaagcttgtcgcagcggaa
aataccgcgaagcctctaagtgatagtaagattgctgctttactggctgaccaaggaatt
caggtagctagacgtaccatagcgaaataccgtgagtctctgggcattgccccatcgagt
cagcgtaaacgcctgctatag
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