Vibrio crassostreae: IS519_12965
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Entry
IS519_12965 CDS
T08776
Symbol
rnc
Name
(GenBank) ribonuclease III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
vcra
Vibrio crassostreae
Pathway
vcra03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
vcra00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
IS519_12965 (rnc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcra03019
]
IS519_12965 (rnc)
03009 Ribosome biogenesis [BR:
vcra03009
]
IS519_12965 (rnc)
03036 Chromosome and associated proteins [BR:
vcra03036
]
IS519_12965 (rnc)
Enzymes [BR:
vcra01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
IS519_12965 (rnc)
Messenger RNA biogenesis [BR:
vcra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IS519_12965 (rnc)
Ribosome biogenesis [BR:
vcra03009
]
Eukaryotic type
90S particles
RNase
IS519_12965 (rnc)
Prokaryotic type
rRNA processing factors
IS519_12965 (rnc)
Chromosome and associated proteins [BR:
vcra03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
IS519_12965 (rnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
DND1_DSRM
DSRM_2
RM44_endonuclase
Motif
Other DBs
NCBI-ProteinID:
UPR29044
LinkDB
All DBs
Position
1:2838241..2838918
Genome browser
AA seq
225 aa
AA seq
DB search
MNSPIDKLERKIGYQFNDADLIHLALTHRSAAGKHNERLEFLGDSILSFVIADDLYHRFP
KVNEGDMSRMRATLVRGHTLAELGREFELGDYLKLGPGELKSGGFRRDSILADAVEAIIG
AVYLDSDTETVRGIILSWYQSRLDAIQPGVSQKDPKTRLQEFLQGRRNPLPVYTVTNIKG
EAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQLSNV
NT seq
678 nt
NT seq
+upstream
nt +downstream
nt
atgaattctccaattgataaactagagagaaagattggctatcagtttaatgatgccgat
cttatccacttggcgctgactcaccgcagcgccgcaggtaaacataacgaacgtcttgag
tttctgggcgattcaattttaagttttgttatcgctgatgatctttaccaccgttttcct
aaggtaaacgaaggtgatatgagccgcatgcgtgcaacattagtacgtggtcatacattg
gcagaactaggtcgtgaattcgaactaggagattacttaaaattaggtccaggtgagttg
aagagtggcggtttccgtcgtgattctattctagcggatgcggttgaagcgatcatcggc
gctgtctatttagatagtgataccgagacggttcgtggcattattttaagctggtaccaa
tctcgcctagatgctattcagcctggagtatctcaaaaagatccgaaaactcgcctacaa
gagtttttgcaaggtcgaagaaatcctctacctgtctacacagtgactaatattaaaggt
gaagcacacaaccaagagtttacggttgagtgtgaagtggcaggtgtggataaacctgtt
atcggtaaaggcactagccgccgcaaggcagaacaagcggctgctgaaacagcattagag
caactaagcaatgtctga
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